Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele33g0534 ATGAACGCTCTGCACGAACTTCTTCTGGCGGGTAAGCATTTCACTATATTTTTAAGTTATCTTACATATCCGCATAAGCACTTGTGCATCATTTCTCTCACTTTGTTCCTTCACTTTCATCACTATTTTGGAGTGCCATTGGTTTTCTATCTGAGTTCCAACGGAATCCAGCAACGTCGACTATATTTTTGGTTTGCTATTTTATCATGGCACCTTGACTTGCTTCAATTGATTGTTGGGTTTTTCACCAATTTGCCTCATGATTCAATGGTTGAAAAATTTCGGTTCTCTTTTGAAGATTTGATTTTTGGGATAGTGTTGAGGGTAAAATTCAATGAGGGGATGAAGAGATCTTCCCAGCTGACTAAGTCAGGGAAGAAATCCAAAGCCAAGCAAAAGAAGATTAACAAAAAACTTGATGCTAAGAAACCAAAGAAACCCCCAACTGCTTTCTTCTACTTCTTGGAGGATTTTCGCAAGGTATTTCGAGAGCAGAATCCGGACATCAAGTCAATGCGTGATATTGGCAAGGCTTGTGGAGAGAAGTGGAAAACAATGACTTATGAGGAAAGTGGAGAGTACGAAGAAACTGATGAAGAATCAGAGTTTGATGATGTGTAA 621 0.3897 MNALHELLLAGKHFTIFLSYLTYPHKHLCIISLTLFLHFHHYFGVPLVFYLSSNGIQQRRLYFWFAILSWHLDLLQLIVGFFTNLPHDSMVEKFRFSFEDLIFGIVLRVKFNEGMKRSSQLTKSGKKSKAKQKKINKKLDAKKPKKPPTAFFYFLEDFRKVFREQNPDIKSMRDIGKACGEKWKTMTYEESGEYEETDEESEFDDV 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele33g0534 206 Pfam HMG (high mobility group) box 144 199 IPR009071 -
Lele33g0534 206 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 144 206 IPR009071 -
Lele33g0534 206 CDD HMGB-UBF_HMG-box 149 190 - -
Lele33g0534 206 MobiDBLite consensus disorder prediction 122 141 - -
Lele33g0534 206 SMART hmgende2 143 203 IPR009071 -
Lele33g0534 206 Gene3D High mobility group box domain 138 202 IPR036910 -
Lele33g0534 206 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 118 200 IPR031061 -
Lele33g0534 206 SUPERFAMILY HMG-box 130 199 IPR036910 -
Lele33g0534 206 MobiDBLite consensus disorder prediction 118 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele33g0534 Lele-ChrLele33 3534777 3538819 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Lele33g0534 HMG_box 1.2e-13 CL0114