Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele33g0478 ATGTTATTAGATGTGGAAGTGATGGGAAACAAGAAGAGGAAGAGATGTGGGAGGGTTTTCAGATTCAAGAACTTTGGTGAGTCTGGTTTTCCTGTGGAGTTTAAAGGGCCATTTCGTGACAATGTTAATGCTTTGCTTGAGTTTGCCAATTCTGAGTCTAAATACTTAGAAGCCATTGAGTCATCTCTGAACCGCCACTGCAAGCACTGTCAATATGTAGGATGGGGGAATCATCTGATATGCATTAAGCAGTATCACTTTGTGTTGCCATTGAAGGAGACATTGGCTGCGAGTCTGAGCTGTGAAGTGCCGTGTGAAGCAATTACTGGAGCAGCATCTATGAGCAACATTAATAATAATAACAATAATAATGGTAAGTCGTCAAAATTAATAGAATTACAGGGCCATATGATGCAAGCTGTTTTTCACTCTAATGGATTCGGCCATTTGCCCTGTCTCCATGGCCTTGTAACCGGGTGGATTTCAAGGCAAGAGGTTAGGGATGCTGCTAGAGCCTACATCGGAGACACTGGTTTGCTAAATTTCGCGTTGAAATCTCTGGGAAATCACGTTGTTGGTAACTACATGGTTCGTCGAAGCTTAAATCCTGTCACCAAAGTTCTAGAATACTGCTTGGAAGACATCTCCAATATTGTTTTCCCCACTCATCTTCAACAAGGTAATAATAATAATAATATGAATAACACTAACAGAAGCATATTAAAGGACAGGTACAAAATCACTAGGGCTCAAGTTACGAAGGACTTGTTTTATTTGTACAAGTACATCCTTGAAGACCCCAAACAAATTACTCAGGGATCGATTTTCTCAGCAATCCCATTGGCAGCGAGGATAATTCTTGATACTAAGTATCTGATCAAAGACTACTTTTGGGAGCTTCCATTTCGAGCTGATCTTGGGATGGACGGAAAACTAAGTCTTCACTGTACGATAATGTTGAGAAACTACAACAACAATAATACCTTAATGATGCCGCCACCGTACGAGTGTGTCACGTTGAAGAGCAACGCCACCATTAATGAGCTGAAGCAAGAAGTTGAGAGAAACTTCAGAGAGATATATTGGGGATTAAGGAGTTTTACTGCGGAACCGGTTAAGAACTTGGAGTTTTGTGGAGGGAATGATCTGGTTTTTGGGATGGTGGAAGTGGGAAGAAAGCTTGTGGTTGAAGGATGGGTTGATAATAATGATGTTAATGTTAATGGGGACAAGAACATAAATAACAACATGGGAGAGATTTGTGAGGTTAATGATGAGAATGATGGGATGATTGTGGAATGTAGTTGTGGGACGAAAGAAGACGATGGAGAGAGAATGGTGTGTTGTGATATATGTGAAACGTGGCAGCATACGAGGTGTGTTAGGATTCCGAATGATGAACAAGTTCCTTCTATATTTCTCTGCAAAAGGTGTGAACAAGAAATTGTTTTGTTCCCTTCCTTCCCATAG 1470 0.4075 MLLDVEVMGNKKRKRCGRVFRFKNFGESGFPVEFKGPFRDNVNALLEFANSESKYLEAIESSLNRHCKHCQYVGWGNHLICIKQYHFVLPLKETLAASLSCEVPCEAITGAASMSNINNNNNNNGKSSKLIELQGHMMQAVFHSNGFGHLPCLHGLVTGWISRQEVRDAARAYIGDTGLLNFALKSLGNHVVGNYMVRRSLNPVTKVLEYCLEDISNIVFPTHLQQGNNNNNMNNTNRSILKDRYKITRAQVTKDLFYLYKYILEDPKQITQGSIFSAIPLAARIILDTKYLIKDYFWELPFRADLGMDGKLSLHCTIMLRNYNNNNTLMMPPPYECVTLKSNATINELKQEVERNFREIYWGLRSFTAEPVKNLEFCGGNDLVFGMVEVGRKLVVEGWVDNNDVNVNGDKNINNNMGEICEVNDENDGMIVECSCGTKEDDGERMVCCDICETWQHTRCVRIPNDEQVPSIFLCKRCEQEIVLFPSFP 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele33g0478 489 SMART PHD_3 433 479 IPR001965 -
Lele33g0478 489 ProSiteProfiles Zinc finger PHD-type profile. 431 481 IPR019787 -
Lele33g0478 489 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 419 482 IPR013083 -
Lele33g0478 489 Pfam PHD-finger 434 480 IPR019787 -
Lele33g0478 489 SUPERFAMILY FYVE/PHD zinc finger 424 481 IPR011011 -
Lele33g0478 489 CDD PHD_MMD1_like 433 478 - -
Lele33g0478 489 ProSitePatterns Zinc finger PHD-type signature. 434 478 IPR019786 -
Lele33g0478 489 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 14 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele33g0478 Lele-ChrLele33 3087996 3090410 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele33g0478 160 489 PHD Transcription Factor Family AT5G22260 45.773 1.61e-86 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele33g0478 PHD 5.8e-09 CL0390