Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele33g0459 ATGTCACGCAACAAAATATTGGGAATGGACCCTGGCAAGCTCTTCATTGGTGGAATTTCATGGGACACAAATGAAGAACGACTCAGACAGTACTTTCAGAATTTTGGAGATGTGGTGGAAGCAGTGATAATGAAGGATCGGACCACAGGGCGTGCTCGTGGTTTTGGATTTATTGTTTTTTCTGATCCTTCTGTTGCTGAACAAGTTGTTATGGAAAAGCATGTCATAGATGGTAGAACTGTTGAAGCAAAAAAGGCCGTCCCTAGGGATGATCATAACATTTCCAACAGAAGCAACAGCAGCATTCATGGATCACCCGGTCCAACCCGCACAAAGAAGATATTTGTTGGAGGTCTTGCGTCCACAGTTACTGAGAGTGACTTCAAGAAGTACTTTGATCAATTTGGAACAATTACAGATGTAGTTGTGATGTATGACCATAACACTCAAAGACCAAGAGGTTTTGGATTCATCACCTATGATTCTGAGGAAGCAGTGGATAAGGTTCTGTACAAAACATTTCATGAACTGAATGGTAAGATGGTTGAGGTTAAGCGGGCTGTTCCAAAGGAAATATCCGCAGGTCCAAGTAGAGGCCAATTAGCTGGATATAACTATGGTTTAAGTAGAGTTAGTGGCTTTTCTAATGGTTTCATTCAGGGATATGACCCTAACTTGGTTGGAGGTCATGGATTTAGAGCAGATGGCAGATTTAGTCCTGTTAATGTTGGTCGAAATGGATATCCTCCATTAAGTCCCAGTTATGGGACAGGATTCAATTTTGAACCAGCATTTAGTCAAAATGGAAATTCAAACTTAACTTCTTCCCTTATGTTAGGAAGAGCTTTGAACCCTTCATACAATGGAAATTCAAGCAGGTTCCATAGTGTCATGGGGTATACTGGTACAGGTGTAGGAAACAATTCAGCAAATCAGAATTTGTGGGGAAACGAGAATATTAGCTTTGCTAATAATCCTACAAATTCTGATGGTTTTCATGGGTATGGAAGTCAAAATTCAGGCGTGGGTTCTTTTGGTGATATTGGAACACTGTGGAGTTGCTCCCCTAGTGCAGATCAAGCTGGAACTGTTAGCTCTGGCTATGGCAAGGGAACTCTTAACTATGGCCCTGGAGATGTTAATTTTAGGCCAAAAGCTGTCGGATATGGAAAAGGAAGTGATGCCATTGCTGAATCAGTGTCATCGTATGCCCTATCCAATGGCAATTTTGATGGGGCATATAAAACCCTTTACGAAGGTGGGTCATTTTTTGTTGACCACACCTGGAGATCATCGCCTTCAGAGCTAGAAGATACTGGTTCTCTTGGTTATGACCTTGGAACTGCTGTTTCAGATTTGATAAGCAAGAGCTCTGGTGGCCACATTGGGGCTTATGCTGTTGCCAATAGCCAATCAAATAGAGGAATTGCTGCGTAG 1437 0.4203 MSRNKILGMDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFIVFSDPSVAEQVVMEKHVIDGRTVEAKKAVPRDDHNISNRSNSSIHGSPGPTRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNGKMVEVKRAVPKEISAGPSRGQLAGYNYGLSRVSGFSNGFIQGYDPNLVGGHGFRADGRFSPVNVGRNGYPPLSPSYGTGFNFEPAFSQNGNSNLTSSLMLGRALNPSYNGNSSRFHSVMGYTGTGVGNNSANQNLWGNENISFANNPTNSDGFHGYGSQNSGVGSFGDIGTLWSCSPSADQAGTVSSGYGKGTLNYGPGDVNFRPKAVGYGKGSDAIAESVSSYALSNGNFDGAYKTLYEGGSFFVDHTWRSSPSELEDTGSLGYDLGTAVSDLISKSSGGHIGAYAVANSQSNRGIAA 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele33g0459 478 Gene3D - 11 93 IPR012677 -
Lele33g0459 478 MobiDBLite consensus disorder prediction 93 107 - -
Lele33g0459 478 FunFam Heterogeneous nuclear ribonucleoprotein 1 11 93 - -
Lele33g0459 478 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 88 IPR000504 GO:0003723
Lele33g0459 478 SMART rrm1_1 113 185 IPR000504 GO:0003723
Lele33g0459 478 SMART rrm1_1 13 84 IPR000504 GO:0003723
Lele33g0459 478 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 172 IPR000504 GO:0003723
Lele33g0459 478 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 80 IPR000504 GO:0003723
Lele33g0459 478 CDD RRM1_hnRNPA_hnRNPD_like 14 84 - -
Lele33g0459 478 FunFam Heterogeneous nuclear ribonucleoprotein 1 109 196 - -
Lele33g0459 478 SUPERFAMILY RNA-binding domain, RBD 10 107 IPR035979 GO:0003676
Lele33g0459 478 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 10 473 - -
Lele33g0459 478 MobiDBLite consensus disorder prediction 86 107 - -
Lele33g0459 478 CDD RRM2_DAZAP1 110 189 IPR034131 GO:0003723
Lele33g0459 478 SUPERFAMILY RNA-binding domain, RBD 107 209 IPR035979 GO:0003676
Lele33g0459 478 Gene3D - 109 197 IPR012677 -
Lele33g0459 478 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele33g0459 Lele-ChrLele33 2952879 2956923 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele33g0459 14 191 Eukaryotic Initiation Factors Gene Family AT2G36660 30.159 2.51e-14 73.6