Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele33g0457 ATGGTTTCTCTGGAAGATTCTCACTCCAATTCCAATCGTTTCCCTTTAACCCGAAGCTATTACTCCACCACCACTTCCGCCACCAATTCTTCATCCAGAATCCAGCGACACACTGGAAGGTCTATGCGCACTATACGCTCTAATATCTTCCAGGATGACCATAGCTGCTCCTTCACCACGGCCACAGAGAAATCTACTTGCCTGTCGGAAAACATGACCGATTCGGTCATCGACCTCCGGCTTGGCGAGCTCGCATCGAAGAACAGCAAATCTGCGAAATCTTCTGCTACGGAGGAGGAGTTGCTTGATCTTTCTCAAGCTTTCAGTGATTTCTCGGCTTGTAGCAGCGATATTTCCGGGGAGCTGCAGAGGCTGGCGAGTTTGCCATCGCCGGAGAATGTGCTGAAGGGCGATGCCAGTGGTGAAACAGAGAAGGAGCCGGAGCCGGAGCCGTGCCTGGGTTTCCTGCAGAGAGAGAATTTCTCTACTGAGATTATTGAGAGTATTTCGCCGGAGGATCTTCAGCCGACGGTGAAGATCTGTATCGATGGGCTACAGTCACAGTCGGTTGCTGTGAAGCGATCTGCTGCGGCTAAGCTCAGGCTGCTGGCGAAGAATCGGGCGGATAATAGAGCTCTGATCGGTGAGTCTGGTGCGGTTCCCGCTTTGGTTCCCCTGCTTCGTTGCAGTGATCCGTGGACGCAGGAACACGCCGTCACGGCCTTGCTGAATCTCTCTCTGCACGAAGATAACAAGATGCTGATTACCAATGCAGGAGCTATTAAGTCACTGATTTATGTGCTCAAAACAGGAACAGAGACTTCGAAGCAGAACGCAGCATGTGCCCTCCTGAGCCTTGCCTTGGTTGAGGAAAACAAGAGTTCGATCGGGGCTAGTGGAGCAATACCACCTCTTGTTTCCTTGCTATTGAGTGGTTCCAGCAGGGGAAAGAAGGACGCTCTGACGACGCTGTATAAGCTCTGCTCTATAAAGCCAAACAAGGAGAGAGCGGTGAGCGCTGGAGCAGTGAAGCCTCTTGTGGAGTTGGTAGCAGAGCAAGGGACGGGTATGGCTGAGAAGGCAATGGTGATACTCAATAGCTTGGCAGCGATTCCGGAAGGGAAGGAAGCAATTGTTGAAGAAGGCGGAATAGCTGCTCTTGTTGAGGCGATTGAAGATGGCTCTGTGAAGGGAAAGGAATTTGCTGTTTTGACACTTCTACAACTATGTGCGGACAGTGTGAGGAATAGAGGGCTGCTTGTGAGGGAGGGTGGAATACCCCCTCTGGTTGCTCTTTCTCAAACCGGAAGTGTTAAAGCTAAGCACAAGGCGGAAACGCTCCTTGGATATTTGAGAGAATCAAGACAAGAAGCATCGACATCAAGTCCTTAG 1392 0.5115 MVSLEDSHSNSNRFPLTRSYYSTTTSATNSSSRIQRHTGRSMRTIRSNIFQDDHSCSFTTATEKSTCLSENMTDSVIDLRLGELASKNSKSAKSSATEEELLDLSQAFSDFSACSSDISGELQRLASLPSPENVLKGDASGETEKEPEPEPCLGFLQRENFSTEIIESISPEDLQPTVKICIDGLQSQSVAVKRSAAAKLRLLAKNRADNRALIGESGAVPALVPLLRCSDPWTQEHAVTALLNLSLHEDNKMLITNAGAIKSLIYVLKTGTETSKQNAACALLSLALVEENKSSIGASGAIPPLVSLLLSGSSRGKKDALTTLYKLCSIKPNKERAVSAGAVKPLVELVAEQGTGMAEKAMVILNSLAAIPEGKEAIVEEGGIAALVEAIEDGSVKGKEFAVLTLLQLCADSVRNRGLLVREGGIPPLVALSQTGSVKAKHKAETLLGYLRESRQEASTSSP 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele33g0457 463 Pfam Armadillo/beta-catenin-like repeat 209 246 IPR000225 GO:0005515
Lele33g0457 463 Pfam Armadillo/beta-catenin-like repeat 291 329 IPR000225 GO:0005515
Lele33g0457 463 Gene3D - 162 460 IPR011989 -
Lele33g0457 463 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 218 260 IPR000225 GO:0005515
Lele33g0457 463 FunFam U-box domain-containing protein 4 317 458 - -
Lele33g0457 463 MobiDBLite consensus disorder prediction 129 150 - -
Lele33g0457 463 FunFam U-box domain-containing protein 4 164 316 - -
Lele33g0457 463 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 341 383 IPR000225 GO:0005515
Lele33g0457 463 SMART arm_5 371 411 IPR000225 GO:0005515
Lele33g0457 463 SMART arm_5 207 247 IPR000225 GO:0005515
Lele33g0457 463 SMART arm_5 248 288 IPR000225 GO:0005515
Lele33g0457 463 SMART arm_5 413 453 IPR000225 GO:0005515
Lele33g0457 463 SMART arm_5 289 329 IPR000225 GO:0005515
Lele33g0457 463 PANTHER U BOX DOMAIN-CONTAINING 133 451 - -
Lele33g0457 463 SUPERFAMILY ARM repeat 175 452 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele33g0457 Lele-ChrLele33 2945531 2947480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele33g0457 48 456 U-box Gene Family AT2G23140 40.802 9.78e-84 268