Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele33g0414 ATGAGGAGACCAAGTTTCTCAAGACCGTACTGTATCGATTCTCGAATCACTGGTAAACTCAGGCGAAGCGTCACAACACAGTCCTCAGCTTCAACCTTAGGGTTCCTCTGTTCTTCTTCTCGCCAAAATCTTAGGGCCTACAATTCATACATTTCCAATCTTATGGCGAAAACTAGACCGGGCAGAAAGGACTTGGACTCATATACCATCAGAGGTACAAACAAGGTCGTCAGAGCTGGAGACTGTGTACTGATGCGACCTTCCGACACCAGCAAGCCTCCGTACGTTGCTCGCGTGGAGAAGATCGAACAAGATAATAGGAACAACGTTAAAGTCCGTGTGAGATGGTATTATCGGCCGGAAGAGTCGATTGGAGGACGCAGGCAATTCCATGGAGCGAAAGAGCTGTTCTTGTCGGACCATTATGACATCCAGAGTGCTCACACCATTGAAGGGAAGTGTATTGTACACTCTTTCAAGAACTACACTAAGCTTGAGAATGTAGGAGCTGAAGATTACTACTGTAGATTTGAATACAAGGCTGCTACCGGTGCTTTCACGCCAGACCGTGTTGCTGTGTATTGCAAATGCGAGATGCCTTATAACCCGGACGACCTCATGGTGCAATGTGAGGGGTGCAAGGATTGGTATCATCCTGCTTGTGTAGGCATGACTATCGAAGAAGCAAAAAAGCTGGACCATTTTGTATGTTCTGAATGTTCTTCTGATGATGACATGAAAAAACCGCAAACTACATTTTCTGCATCACCAGCATCCGATGGCAAGGTGGAGCCCAAGCGGCGGAAGAGATGA 813 0.4686 MRRPSFSRPYCIDSRITGKLRRSVTTQSSASTLGFLCSSSRQNLRAYNSYISNLMAKTRPGRKDLDSYTIRGTNKVVRAGDCVLMRPSDTSKPPYVARVEKIEQDNRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDIQSAHTIEGKCIVHSFKNYTKLENVGAEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTIEEAKKLDHFVCSECSSDDDMKKPQTTFSASPASDGKVEPKRRKR 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele33g0414 270 PANTHER OS08G0421900 PROTEIN 55 262 - -
Lele33g0414 270 ProSiteProfiles BAH domain profile. 75 190 IPR001025 GO:0003682
Lele33g0414 270 Pfam BAH domain 77 189 IPR001025 GO:0003682
Lele33g0414 270 ProSitePatterns Zinc finger PHD-type signature. 195 240 IPR019786 -
Lele33g0414 270 FunFam Bromo-adjacent homology (BAH) domain-containing protein 187 258 - -
Lele33g0414 270 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 256 IPR013083 -
Lele33g0414 270 ProSiteProfiles Zinc finger PHD-type profile. 192 243 IPR019787 -
Lele33g0414 270 CDD BAH_BAHCC1 76 210 - -
Lele33g0414 270 SMART BAH_4 75 190 IPR001025 GO:0003682
Lele33g0414 270 SMART PHD_3 194 241 IPR001965 -
Lele33g0414 270 MobiDBLite consensus disorder prediction 240 270 - -
Lele33g0414 270 FunFam Chromatin remodeling protein EBS 49 186 - -
Lele33g0414 270 Pfam PHD-finger 194 242 IPR019787 -
Lele33g0414 270 Gene3D - 36 186 IPR043151 -
Lele33g0414 270 SUPERFAMILY FYVE/PHD zinc finger 186 244 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele33g0414 Lele-ChrLele33 2604619 2609770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele33g0414 85 186 Core DNA Replication Machinery Family AT4G14700 29.126 3.05e-10 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele33g0414 BAH 1.7e-24 No_clan