Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele33g0410 ATGGAGGTGTTTTGCTCAAACCTTTTTGAAGTTTCAACGAGGAGAAAGGTTCGAGAGAGTCATAAGTATACTCCAACCTCTGAAGATGAAGGAGACATTCTATGCTCCTCAAAGAGGAGGCCTGGTTTTCCATGCGAGAGAGAGGATCGACCAAAGAAATCTATTACTTCCTTGAAAAGGAAAAGAAATCCGCAAAATGATTTTTTGGTTGACGATTTGGAAGCTGATGAGGAAACCGTGGTTGCCAAGATAAGGTCCAGGAGAAGAGCCCATACAATGGACCCCATGATGGATAAAACAGGCTCAGAATCAAGTGGAGAGAGTCCATCCTCGAGCATTACCTCATCGCATTCTGCACCAGCATCCACATTGCCTACTTCGGATTCAACAAACTATACTAAGGACGATCACATTGCAACAAGTAGAAGGGATACTAAACGAAGGTACTGGATATGTCATCAGTGCATGAAAAGGGATAGATTAAGTTATGCCCCTTGCACTAAATGCGAACAAAAAATGTACTGTGATAAGTGCATCAAGCAATGGTATCCTGATATGACAATAGCAGAAATTGCAGAGTGTTGCCCATTTTGCCGTAAAACTTGCAATTGCAATGCCTGCTTGCGCGCAAGTGGGATGATTAAGACATCTATCAGGGATATCTCTGATAATGAGAAGTGTCAGTGTCTGCACTATTGTATCAACTTAGTTCGTCCATTTCTGAAACAAATTTGTGAAGAAGAAGCTCTAGAGGAAGAGATTGAAGCTAGAATACAAGGGACATCACGTTCTGAGATTAAGATACTGCAAACTCCATGTAGTGATGATGAACGTGTCTATTGCAATCATTGTGCTACTTCAATTGTGGACCTTCACCGAAGCTGTCCTGAGTGTTCCTATGAACTCTGCCTCCAATGTTGCCAAGAAGTTCGCAATGGAACTATTTTGCCTCGAGCTGAAATGAGGTTTCAGTATGTGAATAAGGGTTATGATTACATGCATGGTGGTGATCCTGTGGTGGAGTCTTGGGATTCCAAGACCTCAGATGATCCTTCTATTGAGCAATCTATTGAGTGGACTGCAGAAAGCAATGGAAGTGTTTTTTGTGCCCCTAAGGAGTTTGGGGGATGTGGAAACTGCATGTTGGAGCTCAAGCATATTCTTCCACGGGGCTGGATATCTGAACTGGAAGCTAAAGCTGGGGATTTGTTGAGATACTGCGTGACTGGACAAACTCTTCTGAAGCACAAAGCAGCAGCAGCATCAAGCTGCAACTACTCTGTAAGAAGAGCTGCTTCTAGAGAAGGCAGTTATGACAATGACATATACTGCCCTTCTTGGAGGGAGATTGTAAATGAGGGGTTATCCATATTTCAAAAGCATTGGATTAGTGGTGAACCTGTTATAGTTCGTGATGTTCTTCAACAAGCAACAGGTTTGAGCTGGGAGCCCATGGTTATTTGGAGGGCAGTATGTGCGGCTTCAGATTCAAAAATCAACCCCAAAATGTCAGAAGTTAAGACTATTGATTGTCTCGCTGGTTGTGAGGTTGAAATCAGCACTCATAAGTTCTTTAAAGGTTATATGGAGGGAAGAACATATAGAAATCTCTGGCCAGAGATGCTAAAGCTAAAAGACTGGCCTCCCTCTGATAAGTTTGAAGATCTTTTGCCTCGTCACTGTGATGAGTTTATCCGGTCCTTGCCTTTCCAAGAATACACTGATCCTCGGGCTGGAATCCTCAATCTTGCTGTCAAGTTGCCAATGCATGTCTTGAAACCTGACATGGGTCCAAAAACATACATTGCTTATGGAATAAAAGAAGAACTTGGCAGAGGAGATTCTGTAACAAAGCTTCATTGTGACATGTCAGATGCGGTGAATATTTTGACCCATACAGCAGAAGTAAAGTTAAATGATGAGCAAAGCTTGACTATTTCAAGGTTGAAAATAGCACATAAGGTCCAAGATGAAAAAGAGAAGTGCTGTGCTGAAATCAATGGAGATCTCTCTCCAAATGATGTGCCTAAAGGGATCACATTTTTTGATGTCCCTGCAGAAAATGAGACAAGAGAAGCAGGTGCTGCTATTTGGGATATTTTCAGAAGAGAAGATACGGAGAAGTTAGAAAAATATTTAATGAAACACTCAAGAGAGTTCAGGCATATTTTTTGTTCTCCAGTTGAACAGGTTTTCCATCCCATTCATGATCAATGTTTTTATTTAACAATGGAGCACAAGAAGAAGCTGAAGCAGGAGTTCGGTATTGAACCATGGACATTTGAGCAGAAACTTGGGGAGGCTGTGTTTATTCCTGCTGGATGCCCTCACCAAGTCAGAAATCTCATGTCATGCACAAAAGTTGCTGTGGACTTCGTGTCACCAGAAAACCTCGATGAGTGTCTGCGTTTAACTAACCAGTTCCGGCAGCTTCCCAAGAACCACAGGGCCAGAGAAGATAAACTGGAGATAAAGAAGATGATAGTGTATGCTGCTGACCAAATCCTCAGAGATTTTGAATCCTTGCTCACCCTTACTTGA 2541 0.4223 MEVFCSNLFEVSTRRKVRESHKYTPTSEDEGDILCSSKRRPGFPCEREDRPKKSITSLKRKRNPQNDFLVDDLEADEETVVAKIRSRRRAHTMDPMMDKTGSESSGESPSSSITSSHSAPASTLPTSDSTNYTKDDHIATSRRDTKRRYWICHQCMKRDRLSYAPCTKCEQKMYCDKCIKQWYPDMTIAEIAECCPFCRKTCNCNACLRASGMIKTSIRDISDNEKCQCLHYCINLVRPFLKQICEEEALEEEIEARIQGTSRSEIKILQTPCSDDERVYCNHCATSIVDLHRSCPECSYELCLQCCQEVRNGTILPRAEMRFQYVNKGYDYMHGGDPVVESWDSKTSDDPSIEQSIEWTAESNGSVFCAPKEFGGCGNCMLELKHILPRGWISELEAKAGDLLRYCVTGQTLLKHKAAAASSCNYSVRRAASREGSYDNDIYCPSWREIVNEGLSIFQKHWISGEPVIVRDVLQQATGLSWEPMVIWRAVCAASDSKINPKMSEVKTIDCLAGCEVEISTHKFFKGYMEGRTYRNLWPEMLKLKDWPPSDKFEDLLPRHCDEFIRSLPFQEYTDPRAGILNLAVKLPMHVLKPDMGPKTYIAYGIKEELGRGDSVTKLHCDMSDAVNILTHTAEVKLNDEQSLTISRLKIAHKVQDEKEKCCAEINGDLSPNDVPKGITFFDVPAENETREAGAAIWDIFRREDTEKLEKYLMKHSREFRHIFCSPVEQVFHPIHDQCFYLTMEHKKKLKQEFGIEPWTFEQKLGEAVFIPAGCPHQVRNLMSCTKVAVDFVSPENLDECLRLTNQFRQLPKNHRAREDKLEIKKMIVYAADQILRDFESLLTLT 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele33g0410 846 ProSiteProfiles JmjC domain profile. 576 809 IPR003347 -
Lele33g0410 846 SMART cupin_9 557 809 IPR003347 -
Lele33g0410 846 MobiDBLite consensus disorder prediction 85 138 - -
Lele33g0410 846 CDD cupin_RmlC-like 732 781 - -
Lele33g0410 846 ProSiteProfiles Zinc finger RING-type profile. 152 199 IPR001841 -
Lele33g0410 846 Gene3D Cupin 447 818 - -
Lele33g0410 846 MobiDBLite consensus disorder prediction 15 55 - -
Lele33g0410 846 SUPERFAMILY Clavaminate synthase-like 454 829 - -
Lele33g0410 846 FunFam Transcription factor jumonji domain-containing protein 439 818 - -
Lele33g0410 846 MobiDBLite consensus disorder prediction 98 134 - -
Lele33g0410 846 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 66 842 IPR045109 GO:0032454|GO:0033169
Lele33g0410 846 MobiDBLite consensus disorder prediction 15 61 - -
Lele33g0410 846 Pfam JmjC domain, hydroxylase 689 792 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele33g0410 Lele-ChrLele33 2570747 2580969 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lele33g0410 JmjC 5e-15 CL0029