Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele33g0401 ATGGCCACCTTAACCCCAAGAATCCTGCTCCTTTCATGCCTTCTTCTTCCATACTTGACCACAATCTCGTACGCAGATTCCACAGGCAGTTACCTCAGTACTCCCGAGCTCATCAATTCAAGCTATATTCCCGAAATTCCTAGGAACCTTATCCTCAATGCCATAGACTCTTGCTGGAGATCCAACTCAAACTGGGCATCAAATCGGCAAGCCCTAGCTGATTGTGCCGTTGGCTTTGGAAAAGATGCCATTGGAGGTAAGTTTGGGACTATATATGAGGTCACTGATAACTCCGATGACCCAGTCAACCCCAAACCAGGCACACTTCGTTATGGTGTGATCCAAACACGGCCTCTTTGGATAATATTCGCTAAGGACATGGTTATTAGTCTGAACAACGAGCTTGTAGTGAATAGCTATAAAACCATTGATGGCAGAGGAGCCAAAGTGGATATTGCTTATGGACCTTGCATTACCATCCAAGATGTTAATCACGTCATTATACATGGCATTAGCATCCACGATTGTAAACCAGGAAAAGCAGGGATGGTGAGGAGCAGTGAAGAGCATGTGGGGCATAGGGGAGGGTCAGATGGAGATGGAATTAGCATATTTGGTTCGTCAAATATTTGGATAGATCATTGCTTCTTGGCTCGTTGTACGGATGGTCTTATTGATGTTATTCATGCCTCAACTTCTGTCACTATCTCTAACAATTACTTCACCCACCATGACAAAGTAATGCTTCTAGGGCACAACGATGAATATACAGCCGATAGAATAATGGAAGTGACAGTGGCCTTCAATCGCTTTGCAAGCGGGCTCATTGAGAGAATGCCAAGGGTGAGATTTGGGTATGCGCATGTTGTGAACAACCAATATGAAGAGTGGATTCAGTACGCCATTGGAGGCAGTGCCGACCCTACCATTTTAAGTGAAGCCAATTACTTCATCGCTCCAAACAATGCTGCTGCAAAACAGGTTACGAAGAGGGAAGCAAGTGATAAAAGCTGGAGTAAGTGGAAATGGAGGACATACAAGGATAAATTCATGAATGGAGCATACTTTGTTCCATCAGGCTATGGGAGTTGTGCTCCTCATTATTCTGCTTCACAATCTTTTGTCGCTGCTTCTGCCTTCTTGGTCCCTCACTTAACTCTGCATGCTGGTCCTCTTCCCTGTGTTCTTGGCAAAGCTTATGCCACTGGAGGTAAGTATGGAGCTATATATGAGGTTACTGATGCCTCCGATGACCCTGTCAACCCTAAATCAGGCACACTTCGTTATGGTGTGATCCAAACACGGCCTCTTTGGATAACATTCGCCACGGACATGGTTATTAGTCTAAAGAACGAGCTTATAGTGAATAGCTACAAGACAATTGATGGTAGAGGAGCCAAAGTGGAGATTGCTTGTGGACCCTGCATTACCATTCAAGCTGTTAATCGCCTCATTATACATGGAATTATCATCCACGATTGTAAACCAGGAAAAGCTGGGGTTGTGAGAAGCAGCAGTGATCATGTAGGACATCGTCTAGGTTCAGATGGAGATGCCATTAGCATGGTGAGATTTGGGTACGCGCATGTGGTCAACAACAGATATGATGGCTGGAAGATGTATGCCATTGGTGGCAGTGCAGATCCAACCATTCTGAGTGAAAGGAACTACTATATAGCTCCAAGTAACCTCAATGGGAAACAGGTTACCAAGAGGATAGTGAAGAAAGAGTGGAAGAATTGGAAATGGAGGACATACAAGGATGCATTTGTGAATGAAGCCTATTTTGTGCCATCTAGGTATGGAAGTTGTGCCCCTTATTATTCAAGTGCTCAATCTTTTGTTGCTGCTTCAGCATCCTTGGTGCCTGCATTAATAACCCTTCATGCTGGTCCTCTCACTTGTATTCTTGGGAAAGCTTGTTAA 1926 0.4444 MATLTPRILLLSCLLLPYLTTISYADSTGSYLSTPELINSSYIPEIPRNLILNAIDSCWRSNSNWASNRQALADCAVGFGKDAIGGKFGTIYEVTDNSDDPVNPKPGTLRYGVIQTRPLWIIFAKDMVISLNNELVVNSYKTIDGRGAKVDIAYGPCITIQDVNHVIIHGISIHDCKPGKAGMVRSSEEHVGHRGGSDGDGISIFGSSNIWIDHCFLARCTDGLIDVIHASTSVTISNNYFTHHDKVMLLGHNDEYTADRIMEVTVAFNRFASGLIERMPRVRFGYAHVVNNQYEEWIQYAIGGSADPTILSEANYFIAPNNAAAKQVTKREASDKSWSKWKWRTYKDKFMNGAYFVPSGYGSCAPHYSASQSFVAASAFLVPHLTLHAGPLPCVLGKAYATGGKYGAIYEVTDASDDPVNPKSGTLRYGVIQTRPLWITFATDMVISLKNELIVNSYKTIDGRGAKVEIACGPCITIQAVNRLIIHGIIIHDCKPGKAGVVRSSSDHVGHRLGSDGDAISMVRFGYAHVVNNRYDGWKMYAIGGSADPTILSERNYYIAPSNLNGKQVTKRIVKKEWKNWKWRTYKDAFVNEAYFVPSRYGSCAPYYSSAQSFVAASASLVPALITLHAGPLTCILGKAC 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele33g0401 641 PANTHER PECTATE LYASE 18-RELATED 51 397 IPR045032 GO:0030570
Lele33g0401 641 SUPERFAMILY Pectin lyase-like 393 640 IPR011050 -
Lele33g0401 641 PRINTS Pollen allergen Amb family signature 134 150 IPR018082 -
Lele33g0401 641 PRINTS Pollen allergen Amb family signature 198 219 IPR018082 -
Lele33g0401 641 PRINTS Pollen allergen Amb family signature 278 297 IPR018082 -
Lele33g0401 641 PRINTS Pollen allergen Amb family signature 371 394 IPR018082 -
Lele33g0401 641 PRINTS Pollen allergen Amb family signature 341 365 IPR018082 -
Lele33g0401 641 PRINTS Pollen allergen Amb family signature 300 319 IPR018082 -
Lele33g0401 641 PRINTS Pollen allergen Amb family signature 75 92 IPR018082 -
Lele33g0401 641 PRINTS Pollen allergen Amb family signature 98 123 IPR018082 -
Lele33g0401 641 SUPERFAMILY Pectin lyase-like 53 391 IPR011050 -
Lele33g0401 641 SMART amb_all 444 564 IPR002022 -
Lele33g0401 641 SMART amb_all 126 323 IPR002022 -
Lele33g0401 641 Pfam Pectate lyase 134 317 IPR002022 -
Lele33g0401 641 Gene3D - 523 634 IPR012334 -
Lele33g0401 641 Gene3D - 52 393 IPR012334 -
Lele33g0401 641 Gene3D - 396 522 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele33g0401 Lele-ChrLele33 2527675 2533107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele33g0401 518 641 Polysaccharide Lyase AT4G22080 61.290 8.50e-40 149