Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele33g0397 ATGGGGTGGACTAGGGGGCACACCATCGGCCGGGGTTCCACCGCCACCGTGTCGGTTGCAGAGTTTCGTGGGTCTAGTCGGATTTTAGCGGTGAAGTCGGTGGAGCTCCAATGGTCGGAATTTCTCAGGAGAGAACAGAGTATTCTCTCTACATTGGAGTGTCCTCATATTGTAGCATATGAAGGTTGTGATACCACCTTTGAAAATGGCGCCTTCATGTATAACTTATTCATGGAGTATGCGCCTTACGGGTCAATCGCCGACGAAATTCGCGAGCGTGATGGTGGGTTGGATGAGATCTTGGTTGGACGTTATGCTCGTCAGATTCTGCTTGGGTTGAACTACTTGCATTCCAACGGGATTGTGCATTGTGATTTGAAAGGCCAGAACGTTTTGCTCACCGATGAAGGGGCTAAAATTGCTGACTTGGGTTGTTCCCGGAGAGTTGCGGCGGCACAGGATTATGGTTGTGGGGTGATTGCCGGCACCCCGGCATTTATGTCACCGGAGGTGGCGCGTGGGGAGCAGCAGGGGTTCCCTGCCGACGTGTGGGCTCTTGGCTGTACTGTGCTGGAGATGATCACCGGAAAAGCACCGTGGCATGACGTTTCTGACCCGTTGAGTGTCCTGTATCGAGTCGGATTCTCCGGCGAGGTACCGGAGATTCCGAATTCCTTGTCAGAGCAAGGGAAGGATTTTGTCACCATGTGTTTGAAAGCAGATCCAAAAGAGAGGTGGTCAGCAGATGAGCTTCTTAAACATGAGTTCGTTCAGGATTCAAGCAGTGTCCCGAAGAAATTTGATGATTCTAGTTCAAAGTCTCCAACTAGCGTGTTGCTGGATCGAGGTTTCTGGGACTCGTTTGACGAGTTGCAGAAAACCCAAACACGGGATCCGAACCCGAACCCGACGCATGATCACGTCTGTTCTTGGGATCCTCCTAGTCCCAGAAGCAGAATTCGTAGGTTGTCTTCCTCTACACCCAATTGGGAAAGTGATGACAAATGGATCACAGTAAGAGACAGCAGCATCAGAGAGTTCCATGGCGGAGAATCTAATGAAGAAACCGCGAACTGCGGATTTGACAGTTCAAATTACATTAGAGAGGACAATTATTTGGTTGGTACTTGTGAACTCAGAACAGTAATTAGTATAGTCGGATTCGGCGAGTGTTGTCATATTAATGATGATTGTTGCGTCAGAGAATCTTTATTCGGACGTTCACAATGTATAAAACTGGCTCCCAAGAGAAATATTTTTCATGACTTGCTTTCAGTTTTCCCTCTCTAA 1290 0.486 MGWTRGHTIGRGSTATVSVAEFRGSSRILAVKSVELQWSEFLRREQSILSTLECPHIVAYEGCDTTFENGAFMYNLFMEYAPYGSIADEIRERDGGLDEILVGRYARQILLGLNYLHSNGIVHCDLKGQNVLLTDEGAKIADLGCSRRVAAAQDYGCGVIAGTPAFMSPEVARGEQQGFPADVWALGCTVLEMITGKAPWHDVSDPLSVLYRVGFSGEVPEIPNSLSEQGKDFVTMCLKADPKERWSADELLKHEFVQDSSSVPKKFDDSSSKSPTSVLLDRGFWDSFDELQKTQTRDPNPNPTHDHVCSWDPPSPRSRIRRLSSSTPNWESDDKWITVRDSSIREFHGGESNEETANCGFDSSNYIREDNYLVGTCELRTVISIVGFGECCHINDDCCVRESLFGRSQCIKLAPKRNIFHDLLSVFPL 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele33g0397 429 SMART serkin_6 3 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele33g0397 429 Gene3D Transferase(Phosphotransferase) domain 1 2 302 - -
Lele33g0397 429 ProSiteProfiles Protein kinase domain profile. 3 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele33g0397 429 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Lele33g0397 429 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 358 - -
Lele33g0397 429 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Lele33g0397 429 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele33g0397 429 MobiDBLite consensus disorder prediction 293 327 - -
Lele33g0397 429 CDD STKc_MAPKKK 3 257 - -
Lele33g0397 429 SUPERFAMILY Protein kinase-like (PK-like) 3 310 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele33g0397 Lele-ChrLele33 2497979 2499268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele33g0397 2 378 MAP Kinase Kinase Kinase AT5G55090 46.891 1.62e-103 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lele33g0397 Pkinase 1.1e-52 CL0016