Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele33g0367 ATGGGCCATTATCATTGGACGATTCCCAACCTCGGGAACCTTTCCGTTTTAGGGTTAGCTTTGTGGCCTGAGCCCTTGTCCATAGAAGACCCTCCTGGAGCCTCCCTTCCGTTGATTTGCCCTATCTCGTCTTCTTCTTCTTCTATCTTTGCACAACACCCCCCCTTTTCTCTCTCTAAAAGCCCTTACTCCGTTCCGCAAGTCAAGATGATGCAGCCTGGTCCTGGCATGGCTCCCCCAACCATGGGCCAACAGCCTCCCCAGCCGTACCCGCAGCAGCAACATCCCTACATGATGATGCCTCCACAGGCTCAGGCGCCGCCGATGTGGGAACCCTCTGTTCAACCACCGCCACAGTCGATCGCTCCACCGCAGGCGAGTCAAGCCGCCCAACCCACAAGCGCCGACGAGGTCCGTACTCTTTGGATCGGTGATTTGCAGTTCTGGATGGACGAGAACTATTTGTACAGTTGTTTTGCTCATACAGGCGAGGTGGCCTCGGTGAAAGTTATTCGAAACAAGCAAACTAATCAATCTGAAGGTTATGGGTTTATTGAGTTTTTCACACGCGCAGCCGCTGAGAGAATACTTCAAACGTTTAATGGAACCATTATGCCAAATGGTGGGCAAACCTTCAGATTGAACTGGGCATCTTTTGGTTCTGGTGAGAAGCGGGGCGATGATAGTCCAGATTATACAATATTCGTTGGAGATTTAGCTGCAGATGTTGCAGATTACTTGCTGCAGGAGACGTTTCGGGCTAGGTATCCCTCAGTTAAAGGTGCAAAAGTTGTGATCGATAGACTCACTGGAAGGACAAAGGGTTATGGTTTCGTCAGGTTTGGAGATGAAAACGAACAGATGCGAGCGATGACTGAGATGCAAGGTGTATTATGTTCAACGAGACCCATGCGCATTGGACCAGCCACTAACAAAAACCTTGGCACTCAGCCTAAAGCTTCATATCAGAATCCTCAAGGGCCGCAGAACGAGAATGATCCTAATAATTCAACTATTTTTGTCGGGAATTTGGATCCTAATGTAACGGACGATCATCTTAGGCAAGTTTTTGGCCAATATGGTGAGTTAGTACATGTCAAGATTCCAGCGGGCAAGCGTTGTGGGTTTGTTCAATTTGCCGACAGGAGCTGCGCAGAAGAGGCACTGAGGGTGTTAAATGGAACACCATTGGGTGGGCAGAATGTTCGCCTCTCTTGGGGCCGGAGTCCTTCAAACAAACAGACTCAGGCAGATCCAAACCAGTGGAATGGTGGTGGTGCTGGGTATTACGGATATCCACAGGGGTATGAGAACTATGGATATGCTCCAGCTGCTGCTGCACAGGATCCCAACATGTATGGAAGCTATCCTGGCTACAATAATTACCAACCACCACAGCAACAGCAGCATAACGGATATACTTGA 1425 0.4933 MGHYHWTIPNLGNLSVLGLALWPEPLSIEDPPGASLPLICPISSSSSSIFAQHPPFSLSKSPYSVPQVKMMQPGPGMAPPTMGQQPPQPYPQQQHPYMMMPPQAQAPPMWEPSVQPPPQSIAPPQASQAAQPTSADEVRTLWIGDLQFWMDENYLYSCFAHTGEVASVKVIRNKQTNQSEGYGFIEFFTRAAAERILQTFNGTIMPNGGQTFRLNWASFGSGEKRGDDSPDYTIFVGDLAADVADYLLQETFRARYPSVKGAKVVIDRLTGRTKGYGFVRFGDENEQMRAMTEMQGVLCSTRPMRIGPATNKNLGTQPKASYQNPQGPQNENDPNNSTIFVGNLDPNVTDDHLRQVFGQYGELVHVKIPAGKRCGFVQFADRSCAEEALRVLNGTPLGGQNVRLSWGRSPSNKQTQADPNQWNGGGAGYYGYPQGYENYGYAPAAAAQDPNMYGSYPGYNNYQPPQQQQHNGYT 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele33g0367 474 MobiDBLite consensus disorder prediction 305 338 - -
Lele33g0367 474 Gene3D - 313 418 IPR012677 -
Lele33g0367 474 SMART rrm1_1 338 405 IPR000504 GO:0003723
Lele33g0367 474 SMART rrm1_1 233 307 IPR000504 GO:0003723
Lele33g0367 474 SMART rrm1_1 140 215 IPR000504 GO:0003723
Lele33g0367 474 CDD RRM2_SECp43_like 231 310 - -
Lele33g0367 474 SUPERFAMILY RNA-binding domain, RBD 138 312 IPR035979 GO:0003676
Lele33g0367 474 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 130 413 - -
Lele33g0367 474 CDD RRM1_SECp43_like 140 220 - -
Lele33g0367 474 FunFam Polyadenylate-binding protein RBP45 79 223 - -
Lele33g0367 474 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 232 311 IPR000504 GO:0003723
Lele33g0367 474 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 339 402 IPR000504 GO:0003723
Lele33g0367 474 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 234 297 IPR000504 GO:0003723
Lele33g0367 474 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 141 206 IPR000504 GO:0003723
Lele33g0367 474 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 337 409 IPR000504 GO:0003723
Lele33g0367 474 FunFam Polyadenylate-binding protein RBP45C 224 315 - -
Lele33g0367 474 MobiDBLite consensus disorder prediction 71 132 - -
Lele33g0367 474 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 139 219 IPR000504 GO:0003723
Lele33g0367 474 MobiDBLite consensus disorder prediction 79 123 - -
Lele33g0367 474 MobiDBLite consensus disorder prediction 454 474 - -
Lele33g0367 474 FunFam Polyadenylate-binding protein RBP45C 316 443 - -
Lele33g0367 474 MobiDBLite consensus disorder prediction 453 474 - -
Lele33g0367 474 MobiDBLite consensus disorder prediction 306 338 - -
Lele33g0367 474 Gene3D - 80 230 IPR012677 -
Lele33g0367 474 CDD RRM3_NGR1_NAM8_like 336 407 - -
Lele33g0367 474 SUPERFAMILY RNA-binding domain, RBD 321 436 IPR035979 GO:0003676
Lele33g0367 474 Gene3D - 231 307 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele33g0367 Lele-ChrLele33 2312286 2315897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele33g0367 336 417 Eukaryotic Initiation Factors Gene Family AT4G34110 35.955 8.45e-08 52.8