Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele33g0347 ATGGACCCTCAAAATTTCTTATTTTCCCGAGAAAACCCTAGACCCCTCTCGTTCGCTACTGCTCCGATTGTCTCTTCAAAACCCAATATCCCCAATGAGATCGCGCAGAAGCCTTCCCCGTCGATTCTAGTGGGCCGGTTCAAGGCTTTGCTAAAGGAACGAGAGGATGAATTCATGGCTTCCTCAGGTGATGACGTGCTGGTGCCACCCCCTAGCACCGAAGAAATTGTGCAAATTTACCAGTTGTTGTTGTCGGACCTCACTTGCAACTTAAAGCCTATCATTACGGATCTTACCATTATTGCTGAACTTCAGGTAGAGCATGCCAGAGGCATCGCCGATGCAATTTGCACTCGGATTCTTGAGGTGCCTGCAGATCAAAAGCTGCCGTCCCTCTATCTTTTGGACAGCATTGTGAAGAATGTTGGTCAGGGATATATTAGATACTTCTCTTCATGTCTGTCTGAAATTTTCTGTGAGGCATACAGGCAGGTTCATCCTAAGATGCATAACGCTATGCGCCATCTCTTTGGCACCTGGTCAACTGTCTTTCCACCTTCTGTCCTACGCAAGATTGAAGCTCAACTGCAGTTTTCTCAAGCAATTAATAGTCGGTCATCTAGAACTGATCCCCTTAGGGTGTCTGAATCTCGTCAAGCAACTCATGGCATACATATCAATCCAAAATACTTGCAGCAGTTGGAACACTCTACTATGGATAGTGTTAGAGGTGAAAAATTGGAATCAACAGTAAATTTGGGTCTTGCGAATTTTGGCGGTGGAGCTAGTAAGATGCATCAACCTTTATCTAGCAGGCTTGGGAGATCTTCACCTTCAGAAATCGGACTTGATAGGCCTCTGTCAGCAACTATAGATGAGTGTGTGGTTGACAATTCTGCTGGCAGGATAGTTGAGAGAGATCATATTTCTCATCCTGCATCTTATTATGGAGTTGGTAAAGCTGGAAGTAGAGGTGAAGAGTTGAGTGGGTGGAAACAAAAACATTATTCTGATGATGGTCGGAACCAGTTTCATGTTTCTATGTCATCTAGTCTTAGCAATGGGCATCAGCGTCAAAATCTTAAAGCTTTAATAGATGCATATGGGAGCGATAAAAAAGAAACCTTCAATAATAAGCCTTTGTTGGTTGAACATCAGGACACAAATGGTTTAAACAAGGTTGTGTCAACATCATGGCAAAACACTGAAGAGGCTGAATTTGATTGGGAAGATATGAGTCCAACGTTAGTAGACCATAGTAGGAACAATGAATTCTTACCATCAAGAATTGGTTTCTCCAGGGAAAAGCCTGTTACTAGTGCAGCTACTTCAGAGCGGGATCCTAGGCGTAGTTGGTCGAATCGGTCACAGCTACCACCAATGGACGATTCCTCTGTTATAGAAGGAGATAAATATGTTTATTCAAGTTATGGTCGTGGATCACCAGTTCAGGCATCTGGATACCAAAATCAAACAAACCAAACTTTGAGCTCCCGTCCACCTCTTGATGCTTGGAATGTTAGAGGTCGAGCGAGCAATAGTCAGATATCCCCTGTCAGTAACATTCCAAATAGTGATATAAACCTATATGGGACTCGGTCAGCTTTGTCCAGAATGGGTTCCGCACGTGAGTCTAATATGGAGATTCATCCAACAGTTTTACCAGCATCTCTTGGAATGAGACCACCAGTTAATGCTCATGCTGTTCGCTCTCCCACCTTAAACCATACATTTCCCTTGGATAAACATGTTAAGAGTCAGTTTGAGCCAATACATGCTAGCAGCACCATAGTAAATAATGATCAAAATAATTCTTCATTTTTGGACGGTGTTGAGAACAAGTTTACAGGTCTATCAAAGCTGCATCAGCTGCCAACCCAGCTATCTGGGAAGATTTTGTTTAACCAGAAAAAGCATGGACAAGCACCACAACAAGTTTTTCCATCTCAGGATGTGCAAGAGAAGTTACTTAGATCACAAGCTCCAGCAGCTCTGCAATTTAGTCATGGAAACTCTTTGCTAGGGCATACTGATGCTATAAGTGCAGCCATGCCAAATGTGCTTCCTGCTGTACAATTCCCTATTACAGTCCAGAATATTGCAAATAATTTTTCTCAATTACAGAACTTGATGTCTTTACTTCCTGGTGCTGATCCTGCTATGCCACTAACAATACCTCATTCAAATGCCGGCCTTATTGTGTCAACCCAACAGCCAGGTGGTGCATTTTCTGGTTTAATTAACTCGCTTATGGCCCAAGGTTTGATATCAATGACTAATCAACCTCCCGAACAGGATTCTGTTGGAACTGAATTTAATCCAGATGTTCTAAAGATTCGTCATGAGTCTGCAATCAGTGCTTTATATGGTGATCTTCCAAGACAATGCACTACTTGTGGGCTTCGATTTAAGTTCCAAGAGGAGCACGGTAGTCATATGGATTGGCATGTTACTAAGAACCGGATGTCTAAAAACCATAAGCAGAAGCCCTCTCGCAAGTGGTTTGTGAGTGAGAGTATGTGGCTTAGAGGCGCAGAGGCATTGGGAACAGAATCAGTCCCTGGTTTTTTGCCGAGTGAGATTTTAGAGGAAAAAACAGATGATGAAGAGTTGGCTGTGCCAGCTGATGAGGATCAGAATACATGCGCATTATGTGGTGAACCTTTCGATAAGTTTTACAGTGATGAAACTGAGGAATGGATGTACAGAGGAGCTGTATATATCAATGCACCCAAAGGAACAGTAGCAGGCATGGATAGGTCGCAGTTAGGCCCCATTGTTCATGCGAAGTGCAGATCTGAGTCTAGTGCGGTTCCGTCTGAAGATAACGGACTGGATGAAAGGGGCACTGATGAGGAGGAGAGTCGACGAAAGCGAATGCGGAGTTGA 2889 0.4344 MDPQNFLFSRENPRPLSFATAPIVSSKPNIPNEIAQKPSPSILVGRFKALLKEREDEFMASSGDDVLVPPPSTEEIVQIYQLLLSDLTCNLKPIITDLTIIAELQVEHARGIADAICTRILEVPADQKLPSLYLLDSIVKNVGQGYIRYFSSCLSEIFCEAYRQVHPKMHNAMRHLFGTWSTVFPPSVLRKIEAQLQFSQAINSRSSRTDPLRVSESRQATHGIHINPKYLQQLEHSTMDSVRGEKLESTVNLGLANFGGGASKMHQPLSSRLGRSSPSEIGLDRPLSATIDECVVDNSAGRIVERDHISHPASYYGVGKAGSRGEELSGWKQKHYSDDGRNQFHVSMSSSLSNGHQRQNLKALIDAYGSDKKETFNNKPLLVEHQDTNGLNKVVSTSWQNTEEAEFDWEDMSPTLVDHSRNNEFLPSRIGFSREKPVTSAATSERDPRRSWSNRSQLPPMDDSSVIEGDKYVYSSYGRGSPVQASGYQNQTNQTLSSRPPLDAWNVRGRASNSQISPVSNIPNSDINLYGTRSALSRMGSARESNMEIHPTVLPASLGMRPPVNAHAVRSPTLNHTFPLDKHVKSQFEPIHASSTIVNNDQNNSSFLDGVENKFTGLSKLHQLPTQLSGKILFNQKKHGQAPQQVFPSQDVQEKLLRSQAPAALQFSHGNSLLGHTDAISAAMPNVLPAVQFPITVQNIANNFSQLQNLMSLLPGADPAMPLTIPHSNAGLIVSTQQPGGAFSGLINSLMAQGLISMTNQPPEQDSVGTEFNPDVLKIRHESAISALYGDLPRQCTTCGLRFKFQEEHGSHMDWHVTKNRMSKNHKQKPSRKWFVSESMWLRGAEALGTESVPGFLPSEILEEKTDDEELAVPADEDQNTCALCGEPFDKFYSDETEEWMYRGAVYINAPKGTVAGMDRSQLGPIVHAKCRSESSAVPSEDNGLDERGTDEEESRRKRMRS 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele33g0347 962 ProSiteProfiles CID domain profile. 72 200 IPR006569 -
Lele33g0347 962 SUPERFAMILY ENTH/VHS domain 71 198 IPR008942 -
Lele33g0347 962 SMART 558neu5 75 197 IPR006569 -
Lele33g0347 962 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 69 948 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Lele33g0347 962 MobiDBLite consensus disorder prediction 930 962 - -
Lele33g0347 962 ProSitePatterns Zinc finger C2H2 type domain signature. 796 816 IPR013087 -
Lele33g0347 962 Pfam CID domain 92 191 IPR006569 -
Lele33g0347 962 MobiDBLite consensus disorder prediction 428 467 - -
Lele33g0347 962 FunFam polyadenylation and cleavage factor homolog 4 69 197 - -
Lele33g0347 962 Gene3D - 70 198 IPR008942 -
Lele33g0347 962 MobiDBLite consensus disorder prediction 483 506 - -
Lele33g0347 962 CDD CID_Pcf11 80 197 - -
Lele33g0347 962 MobiDBLite consensus disorder prediction 483 501 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele33g0347 Lele-ChrLele33 2167160 2173476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele33g0347 734 962 C2H2 Transcription Factor Family AT4G04885 72.489 2.33e-108 352