Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele33g0346 ATGGGAAGGACGACCAATGTAGACGATGATTACGAGACCAAATCTGTGACTGAAACATCCATGGAAGCTCCTTCCGGTGACGACCAAGACCCCGCCGACCTACGTCCCAAAAAGAAGCGCTATCATCGCCACACGCAGCGCCAAATACAAGAGTTGGAAGCCTTCTTCAAGGAGTGTCCCCACCCAGATGACAAACAAAGGAAAGAGCTGAGCCGTGAGCTGGGATTAGAACCTTTGCAAGTCAAGTTTTGGTTCCAAAACAAGCGCACCCAAATGAAGGCACAACATGAACGGCATGAGAATTCTATATTGAAGTCTGAGAATGACAAGCTTCGTGCTGAGAACAATAGGTACAAGGAAGCCCTAAGCAACGCTTCATGCCCCAACTGTGGAGGCCCTGCCGCTCTTGGTGAAATGTCCTTTGACGAGCAGCATCTCAGGATTGAGAACGCTCGTTTAAGGGAAGAGATAGAGAGGATATCAGGAATTGCAGCCAAATACGTTGGAAAGCCAGTGACATCCTTTTCGCACCTTTCATCTCATCATCATGTTCCTTCACGGTCGCTGGAAGATCTTGGAGTTGGTAGTAACTTTGTGTCACAGTCAGGGACGGTAGGGGAAATGTACAGTGTGAGTAACAGTGACCTTATTAGGTCACTACCAGTGCCTTCTGAAGCTGATAAGCCCATGATTGTGGAGCTTGCTGTTGCAGCAATGGAGGAACTCATCAGATTGGCTCAGGCTGGAGAACCCTTGTGGATTATCTCTAGTGACCGCGAAGTTCTTAATGAAGAGGAATACTTGAGGACTTTTCCTAGGGGCATAGGTCCTAAACCTTTTGGATTAAGATCTGAAGCTTCAAGGGAATCCGCTGTCGTTATCATGAACCATACTAACCTTGTTGAGATTCTCATGGACGTGATGTCTGCTGAGTTCCAAGTGCCTTCACCTCTGGTTCCAACAAGAGAGAATTATTTTGTAAGGTACTGTAAACAGCATGCAGATGGGACATGGGCAGTGGTCGATGTTTCCTTAGATAACCTACGACCAAGTGGTTTATCTAAAAGCCGAAGAAGGCCTTCTGGCTGTCTCGTCCAAGAATTGCCAAATGGTTACTCTAAGGTTACTTGGATAGAACATGTAGAAGTGGATGATAGGAATCTGCAAGATATATACAGACCCCTAGTGAATTGTGGGTTTGCCTTTGGAGCTAAACGTTGGGTGGCCACACTAGATAGACAATGTGAACGTATTGCTAGTTCTATGGCCTGCAACATACCTGCAGGGGACCTTTGTGGGAATGATGATGTGAGAGTTATGACCAGAAAGAGTATGGATGATCCTGGCAGACCTCCTGGTATTGTTCTCAGTGCTGCTACTTCTTTCTTCCTTCCCGTTCCTCCAAACAGGGTCTTCAATTTCCTCCGAGATGAGAACTCCAGAAGTGAGTGGGATATTCTATCCAATGGAGGTCTAGTACAAGAAATGGCTCACATAGCAAATGGTCGTGATCCAGGCAATTTTGTCTCTCTACTTCGTGTCAATAGCGCAAATTCAAGCCAAAGCAACATGGTGATACTACAGGAGAGCTGCACAGACGCAACGGGGTCGTATGTGATATATGCTCCTGTGGATATTGTGGCCATGAACACCGTGCTCGGAGGAGGAGATCCTGATTATGTTGCTCTCTTGCCTTCTGGTTTCGCCATTCTTCCCGACGGCTCCTCTCTGAACAACAACAATGGGGGAGGGAATACTCTTGATGTTGGATCTGGAGGAGGTTCTCTTCTCACTGTTGCGTTTCAGATCTTGGTTGATTCAATGCCAACTGCTAAACTCTCTCTGGGCTCAGTCGCCACTGTTAACAGTTTGATTAATTGCACCGTCGAAAGGATCAAAGCTGCTGTCATCTAA 1914 0.4676 MGRTTNVDDDYETKSVTETSMEAPSGDDQDPADLRPKKKRYHRHTQRQIQELEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQHERHENSILKSENDKLRAENNRYKEALSNASCPNCGGPAALGEMSFDEQHLRIENARLREEIERISGIAAKYVGKPVTSFSHLSSHHHVPSRSLEDLGVGSNFVSQSGTVGEMYSVSNSDLIRSLPVPSEADKPMIVELAVAAMEELIRLAQAGEPLWIISSDREVLNEEEYLRTFPRGIGPKPFGLRSEASRESAVVIMNHTNLVEILMDVMSAEFQVPSPLVPTRENYFVRYCKQHADGTWAVVDVSLDNLRPSGLSKSRRRPSGCLVQELPNGYSKVTWIEHVEVDDRNLQDIYRPLVNCGFAFGAKRWVATLDRQCERIASSMACNIPAGDLCGNDDVRVMTRKSMDDPGRPPGIVLSAATSFFLPVPPNRVFNFLRDENSRSEWDILSNGGLVQEMAHIANGRDPGNFVSLLRVNSANSSQSNMVILQESCTDATGSYVIYAPVDIVAMNTVLGGGDPDYVALLPSGFAILPDGSSLNNNNGGGNTLDVGSGGGSLLTVAFQILVDSMPTAKLSLGSVATVNSLINCTVERIKAAVI 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele33g0346 637 ProSitePatterns 'Homeobox' domain signature. 70 93 IPR017970 GO:0000981|GO:0006355
Lele33g0346 637 CDD START_ArGLABRA2_like 228 416 - -
Lele33g0346 637 SUPERFAMILY Bet v1-like 432 633 - -
Lele33g0346 637 Gene3D - 25 111 - -
Lele33g0346 637 CDD homeodomain 38 96 IPR001356 GO:0003677
Lele33g0346 637 Coils Coil 94 124 - -
Lele33g0346 637 Pfam START domain 307 417 IPR002913 GO:0008289
Lele33g0346 637 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 35 307 IPR042160 -
Lele33g0346 637 ProSiteProfiles 'Homeobox' domain profile. 35 95 IPR001356 GO:0003677
Lele33g0346 637 ProSiteProfiles START domain profile. 224 420 IPR002913 GO:0008289
Lele33g0346 637 SMART START_1 233 417 IPR002913 GO:0008289
Lele33g0346 637 MobiDBLite consensus disorder prediction 1 46 - -
Lele33g0346 637 FunFam Homeobox-leucine zipper protein HDG1 25 111 - -
Lele33g0346 637 MobiDBLite consensus disorder prediction 1 16 - -
Lele33g0346 637 SUPERFAMILY Homeodomain-like 20 95 IPR009057 -
Lele33g0346 637 Pfam Homeodomain 38 93 IPR001356 GO:0003677
Lele33g0346 637 Gene3D - 289 417 IPR023393 -
Lele33g0346 637 SMART HOX_1 36 99 IPR001356 GO:0003677
Lele33g0346 637 SUPERFAMILY Bet v1-like 226 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele33g0346 Lele-ChrLele33 2158258 2161757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele33g0346 1 636 Homeobox Transcription Factor Family AT4G04890 70.735 0.0 989
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele33g0346 START 1.6e-32 CL0209