Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele33g0337 ATGGACGCACCTAAGTCGGTCACTTCTTGTTATAAAAGAAGCCCCAATCCTCCAATTTCCCTCACAATCAGTTTTGTTTCACGTTGCAGAGAAAACCCTAGCAAATCAAAGCTCTCCAAGATGCAAATCTTCGTCAAGACCCTTACCGGCAAGACCATCACTCTCGAAGTCGAGAGTTCAGATACAATAGACAATGTTAAGGCAAAGATTCAAGACAAGGAAGGGATCCCGCCGGACCAGCAGAGACTGATTTTTGCGGGTAAGCAGCTTGAGGACGGACGTACCCTTGCCGACTATAACATCCAAAAGGAATCGACTCTCCACCTCGTGCTCCGTTTACGTGGTGGTATGCAGATCTTTGTCAAGACCCTCACAGGCAAGACCATTACCCTTGAGGTGGAGAGTTCTGACACCATCGACAATGTCAAGTCTAAGATTCAAGACAAGGAGGGCATCCCACCAGACCAACAGAGGCTGATCTTCGCCGGAAAGCAACTGGAAGATGGTCGTACCTTGGCTGATTACAACATCCAAAAGGAATCTACCCTCCACCTTGTCCTCCGACTCCGCGGAGGCATGCAAATCTTTGTTAAGACCCTCACTGGCAAAACCATCACCCTTGAGGTGGAGAGCTCCGACACCATTGACAACGTGAAGGCCAAGATCCAAGATAAGGAAGGCATCCCTCCAGACCAGCAAAGGCTAATCTTTGCCGGGAAACAGCTTGAGGATGGCCGTACCCTGGCCGATTATAACATCCAGAAAGAGTCCACCCTCCACCTTGTGCTTCGTCTCCGTGGAGGAATGCAAATTTTTGTCAAGACACTGACCGGTAAGACAATTACCCTAGAGGTGGAAAGTTCTGACACTATTGATAACGTCAAGGCAAAGATCCAGGACAAAGAGGGAATCCCACCAGACCAACAAAGGCTTATCTTCGCTGGTAAACAGCTTGAGGATGGCCGAACCTTGGCTGACTACAACATCCAGAAGGAGTCCACTCTTCATCTTGTTCTGCGTCTCCGTGGTGGTATGCAGATTTTTGTGAAGACTCTTACTGGCAAGACTATTACCTTGGAGGTTGAGAGCTCTGACACAATTGACAATGTTAAGGCTAAGATCCAAGATAAGGAAGGAATACCCCCTGACCAGCAGAGGTTGATCTTCGCTGGAAAGCAGCTGGAAGATGGACGTACATTGGCTGACTATAACATTCAGAAGGAGTCCACACTTCACCTTGTGCTTCGTCTCAGGGGAGGTATGCAGATCTTTGTGAAGACCTTGACAGGCAAAACCATCACCCTGGAGGTTGAGAGTTCGGATACAATCGACAATGTGAAGGCAAAAATCCAGGACAAGGAAGGAATCCCACCGGACCAGCAAAGGTTGATCTTTGCAGGGAAGCAGTTGGAGGATGGAAGAACCCTTGCTGACTACAACATCCAGAAGGAGTCCACCCTTCACCTCGTCCTCCGTCTTCGTGGAGGATTCTAA 1494 0.4873 MDAPKSVTSCYKRSPNPPISLTISFVSRCRENPSKSKLSKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele33g0337 497 SUPERFAMILY Ubiquitin-like 343 420 IPR029071 -
Lele33g0337 497 FunFam Polyubiquitin 3 193 268 - -
Lele33g0337 497 Gene3D - 117 192 - -
Lele33g0337 497 Gene3D - 421 497 - -
Lele33g0337 497 Gene3D - 34 116 - -
Lele33g0337 497 Gene3D - 346 420 - -
Lele33g0337 497 Gene3D - 269 345 - -
Lele33g0337 497 Gene3D - 193 268 - -
Lele33g0337 497 PANTHER UBIQUITIN 117 196 - -
Lele33g0337 497 ProSitePatterns Ubiquitin domain signature. 371 396 IPR019954 -
Lele33g0337 497 SUPERFAMILY Ubiquitin-like 116 192 IPR029071 -
Lele33g0337 497 CDD Ubl_ubiquitin 117 192 - -
Lele33g0337 497 FunFam Polyubiquitin 3 269 344 - -
Lele33g0337 497 SMART ubq_7 421 492 IPR000626 GO:0005515
Lele33g0337 497 SMART ubq_7 117 188 IPR000626 GO:0005515
Lele33g0337 497 SMART ubq_7 193 264 IPR000626 GO:0005515
Lele33g0337 497 SMART ubq_7 269 340 IPR000626 GO:0005515
Lele33g0337 497 SMART ubq_7 41 112 IPR000626 GO:0005515
Lele33g0337 497 SMART ubq_7 345 416 IPR000626 GO:0005515
Lele33g0337 497 ProSitePatterns Ubiquitin domain signature. 447 472 IPR019954 -
Lele33g0337 497 SUPERFAMILY Ubiquitin-like 268 344 IPR029071 -
Lele33g0337 497 ProSitePatterns Ubiquitin domain signature. 67 92 IPR019954 -
Lele33g0337 497 ProSiteProfiles Ubiquitin domain profile. 41 116 IPR000626 GO:0005515
Lele33g0337 497 CDD Ubl_ubiquitin 269 344 - -
Lele33g0337 497 ProSitePatterns Ubiquitin domain signature. 219 244 IPR019954 -
Lele33g0337 497 PRINTS Ubiquitin signature 93 114 IPR019956 -
Lele33g0337 497 PRINTS Ubiquitin signature 51 71 IPR019956 -
Lele33g0337 497 PRINTS Ubiquitin signature 72 92 IPR019956 -
Lele33g0337 497 ProSiteProfiles Ubiquitin domain profile. 193 268 IPR000626 GO:0005515
Lele33g0337 497 ProSiteProfiles Ubiquitin domain profile. 269 344 IPR000626 GO:0005515
Lele33g0337 497 ProSiteProfiles Ubiquitin domain profile. 345 420 IPR000626 GO:0005515
Lele33g0337 497 ProSiteProfiles Ubiquitin domain profile. 117 192 IPR000626 GO:0005515
Lele33g0337 497 ProSiteProfiles Ubiquitin domain profile. 421 496 IPR000626 GO:0005515
Lele33g0337 497 ProSitePatterns Ubiquitin domain signature. 295 320 IPR019954 -
Lele33g0337 497 CDD Ubl_ubiquitin 421 496 - -
Lele33g0337 497 FunFam Polyubiquitin 3 421 496 - -
Lele33g0337 497 FunFam Polyubiquitin 3 117 192 - -
Lele33g0337 497 FunFam Polyubiquitin 3 41 116 - -
Lele33g0337 497 ProSitePatterns Ubiquitin domain signature. 143 168 IPR019954 -
Lele33g0337 497 CDD Ubl_ubiquitin 41 116 - -
Lele33g0337 497 SUPERFAMILY Ubiquitin-like 192 268 IPR029071 -
Lele33g0337 497 FunFam Polyubiquitin 3 345 420 - -
Lele33g0337 497 CDD Ubl_ubiquitin 345 420 - -
Lele33g0337 497 SUPERFAMILY Ubiquitin-like 420 496 IPR029071 -
Lele33g0337 497 Pfam Ubiquitin family 347 418 IPR000626 GO:0005515
Lele33g0337 497 Pfam Ubiquitin family 195 266 IPR000626 GO:0005515
Lele33g0337 497 Pfam Ubiquitin family 119 190 IPR000626 GO:0005515
Lele33g0337 497 Pfam Ubiquitin family 271 342 IPR000626 GO:0005515
Lele33g0337 497 Pfam Ubiquitin family 43 114 IPR000626 GO:0005515
Lele33g0337 497 Pfam Ubiquitin family 423 494 IPR000626 GO:0005515
Lele33g0337 497 SUPERFAMILY Ubiquitin-like 39 116 IPR029071 -
Lele33g0337 497 CDD Ubl_ubiquitin 193 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele33g0337 Lele-ChrLele33 2110930 2113001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele33g0337 421 497 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 1.83e-46 156