Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele33g0315 ATGTCCATCTTCATCCTCCTCTCTCTCTTGGGATTTCTGAGCTTCACAAGCCAAGCTGCTCCAGTTTACACAAGTCATGATTGTGGTGGAATCTCTTTCGAACCCAACGGTACATTCCGAGCCAATTTGAATGTCCTTCTCTCTTCCCTCACCTCCAACGCCTCCCTCCCCGACGGTTATTACCGTACCACCGTGTCCCCGTCAACCCCTTCCGCCATCACTGGACTTTTCCTCTGTCGCGGCGATGTCACCCCCGCCGTGTGCCAATCTTGCATCGCCGCCGCATCCAAGGGGATAACAAACCGCTGTCCGAACGAAACAGAGTCCATAATCTGGTACGATGTGTGTATGCTTCGTTACTCGAACGGGGACTTGAACCCCATGGTTCCTGCTACGAATTTGCCAAACGAAAGCACCATAGCTAGCTCCGAACTGGATCGGTTCGACGCCGTGCTGTCGAACATGTTGAATGATGTGACAGGAAAAGCTACTACCCAGACAGGGAAGAAATTCGCTACGGCGGAGGTGAACTTCGCGTCGTGGGAAACTGTGTACAGCCTCGCACAGTGCATTCCTGACTCGTCCGATTGTAATTCGTGTTTCAAAAGTGCCATCGGGTTTCTACCAGATTGCTGTCGTGGAAGCAAGGGGGCAACGGTTCTGGTTCCATCATGTAATATAAGATATGAATTTTATCCGTTTTACAATATAAACCACGTATCCTCTGAACCGCTACTTCCTCCTCCTTCAGAAAGTAGAAATATCTCAATGATTGTTGCGATTGTCGTCCCGATTGTTGTTGCTTTGGCACTTCTCGTTGTGGTTTGTTGTTTCCTCCGTAAGAGGGCAAGCAAGAAGTACAACACATTCGCAGCGGATAAAACTGGGACTGATCTTTCAGAGATAGAGTCTCTGCAATTTGAACTGGTTGCAATAGAAGCTGCCACGAAAAAGTTCTCAGATGAGAACAAGATTGGCGAAGGTGGATATGGGGGAGTTTATAAGGGCATTCTTCCAAGTGGACAGGAGATAGCTGTGAAGAGGTTGTCGGTAACCTCGTTGCAGGGTGCTTTGGAGTTTACAAATGAAGCTGTTCTTGTGGCCAAGCTTCAACATAGGAATTTAGTGAGGCTGTTGGGATTTTGCTTAGAGGGGCAAGAGAAGATACTTGTCTATGAATATATCCCAAACAGAAGTCTCGACAAGTTTCTGTTTGATCCAACAAGGAAAAGAATACTAGATTGGTCAAAACGCTACAAGATCATAGCAGGCATTGCTCGAGGAATGCTATATCTTCATGAAGATTCTCAACTTAGAATAATTCATCGTGATCTTAAAGCTAGTAATATTCTACTAGATGTTAATATGAATCCGAAAATTTCAGATTTTGGCATGGCAAAAATCTTCCAAGGTAATCAGACTCAAGTAAATACAAAAAGAATAGTTGGAACTTATGGTTATATGTCTCCAGAGTATGCAATGCATGGGCAATTTTCTGTAAAATCAGATGTGTTTAGCTTTGGTGTCTTAGTTTTAGAGATTATTACTGGCAAGAAGAACACCGATTTGTACCAATCACATCAAGCCAATGACCTCTTAAACTACGCCTGGGATAACTGGACACAGAAAACACCATTGGAGTTGTTGGATCCAACACTGAGAGGTTCTTATTCAAGAAATGAAGTCATAAGATGCACTCATATTGCTTTACTATGCATTCAGGAGAATCCCTCTGATAGACCTTCGATGGCAAATATAGTACTTATGCTAGACAGTTGCTCCGTTACATTGTCATTACCTCGAAAGCCTGCATACTATATGCGCAGAAGAACACCGAACAGACAAAACAATGGTGTTGATTCTGACCAATCAACATGTTCGATTCTGTGGTCTGCAAATGATGCTTCCATTACTGAAGTTTACCCTCGATAA 1932 0.4405 MSIFILLSLLGFLSFTSQAAPVYTSHDCGGISFEPNGTFRANLNVLLSSLTSNASLPDGYYRTTVSPSTPSAITGLFLCRGDVTPAVCQSCIAAASKGITNRCPNETESIIWYDVCMLRYSNGDLNPMVPATNLPNESTIASSELDRFDAVLSNMLNDVTGKATTQTGKKFATAEVNFASWETVYSLAQCIPDSSDCNSCFKSAIGFLPDCCRGSKGATVLVPSCNIRYEFYPFYNINHVSSEPLLPPPSESRNISMIVAIVVPIVVALALLVVVCCFLRKRASKKYNTFAADKTGTDLSEIESLQFELVAIEAATKKFSDENKIGEGGYGGVYKGILPSGQEIAVKRLSVTSLQGALEFTNEAVLVAKLQHRNLVRLLGFCLEGQEKILVYEYIPNRSLDKFLFDPTRKRILDWSKRYKIIAGIARGMLYLHEDSQLRIIHRDLKASNILLDVNMNPKISDFGMAKIFQGNQTQVNTKRIVGTYGYMSPEYAMHGQFSVKSDVFSFGVLVLEIITGKKNTDLYQSHQANDLLNYAWDNWTQKTPLELLDPTLRGSYSRNEVIRCTHIALLCIQENPSDRPSMANIVLMLDSCSVTLSLPRKPAYYMRRRTPNRQNNGVDSDQSTCSILWSANDASITEVYPR 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele33g0315 643 ProSiteProfiles Gnk2-homologous domain profile. 128 234 IPR002902 -
Lele33g0315 643 Gene3D - 132 234 IPR038408 -
Lele33g0315 643 Gene3D - 21 124 IPR038408 -
Lele33g0315 643 SMART serkin_6 319 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele33g0315 643 ProSitePatterns Protein kinases ATP-binding region signature. 325 347 IPR017441 GO:0005524
Lele33g0315 643 ProSiteProfiles Protein kinase domain profile. 319 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele33g0315 643 ProSiteProfiles Gnk2-homologous domain profile. 21 125 IPR002902 -
Lele33g0315 643 Gene3D Phosphorylase Kinase; domain 1 280 394 - -
Lele33g0315 643 ProSitePatterns Serine/Threonine protein kinases active-site signature. 440 452 IPR008271 GO:0004672|GO:0006468
Lele33g0315 643 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 31 639 - -
Lele33g0315 643 FunFam Cysteine-rich receptor-like protein kinase 10 131 234 - -
Lele33g0315 643 Pfam Salt stress response/antifungal 33 122 IPR002902 -
Lele33g0315 643 Pfam Salt stress response/antifungal 144 231 IPR002902 -
Lele33g0315 643 Gene3D Transferase(Phosphotransferase) domain 1 395 599 - -
Lele33g0315 643 CDD STKc_IRAK 325 591 - -
Lele33g0315 643 Pfam Protein tyrosine and serine/threonine kinase 322 589 IPR001245 GO:0004672|GO:0006468
Lele33g0315 643 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 280 394 - -
Lele33g0315 643 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 21 125 - -
Lele33g0315 643 FunFam cysteine-rich receptor-like protein kinase 10 395 597 - -
Lele33g0315 643 SUPERFAMILY Protein kinase-like (PK-like) 305 618 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele33g0315 Lele-ChrLele33 1940720 1943203 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele33g0315 6 643 Receptor kinase-like Gene Family AT4G05200 49.099 0.0 642
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lele33g0315 PK_Tyr_Ser-Thr 5.8e-49 CL0016