Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele33g0308 ATGGATCTCATGAAACAAACCAAGAAAACCACTACCACAGGTCGCAAGAAGATCGAGATCAAGGAGATAGACAAAGATTCCAACAAACATGTCACCTTCTCAAAACGACGCACAGGGCTGTTCAAGAAGGCCAGCGAGCTCTGCGTCTTGTGCAATGCTCAGATCGCTATCATCGTGTTCTCGCCGGCCGACAAAGCCTTTTGCTTTGGCCAACCCAGCGTCGAAGCCGTCCTCCGTCGCTACAGCAGCGAAGGGAAAGAAGATAATCACGACGAACAAGCTATTAGGGCGCCGGCGAGCGAGTTCATCAGTTCGGTGTCTTACGAAGAACTTCACACACAACACGAGGAAGCAGTGAAGGCATTGGAGATGGAGAAGCAACAATTGGAGGAAATAAAAAATGTGGCTAAGGTATGGCATAGAGGAAACTGGTGGGACGAACCGATTGATGGGATGGATTTGGATCAGTTAGAGCAATATGTGTTGGCCATGCATGAGTTAAGAAGAAAGGTTGCTGAGAAGGCTGATGAGTTAATGAGGGTTTCGATAATGCCGCCGTCGGCGACGTCGTTTTATGGAGAAAGTTCGTTTGGTGGTGTTCTTAACGGAGGTGGCAGCGGCTATGGTGGTTTTTCTAACCAGTTCGGGGACGGTGCTCTTGTTGCTTATCCTGAAAAGTTTGAATTTTGA 690 0.4826 MDLMKQTKKTTTTGRKKIEIKEIDKDSNKHVTFSKRRTGLFKKASELCVLCNAQIAIIVFSPADKAFCFGQPSVEAVLRRYSSEGKEDNHDEQAIRAPASEFISSVSYEELHTQHEEAVKALEMEKQQLEEIKNVAKVWHRGNWWDEPIDGMDLDQLEQYVLAMHELRRKVAEKADELMRVSIMPPSATSFYGESSFGGVLNGGGSGYGGFSNQFGDGALVAYPEKFEF 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele33g0308 229 FunFam Agamous-like MADS-box protein AGL62 25 91 - -
Lele33g0308 229 Coils Coil 157 177 - -
Lele33g0308 229 SMART madsneu2 13 72 IPR002100 GO:0003677|GO:0046983
Lele33g0308 229 Gene3D - 26 95 IPR036879 GO:0003677|GO:0046983
Lele33g0308 229 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 23 69 IPR002100 GO:0003677|GO:0046983
Lele33g0308 229 PRINTS MADS domain signature 50 71 IPR002100 GO:0003677|GO:0046983
Lele33g0308 229 PRINTS MADS domain signature 35 50 IPR002100 GO:0003677|GO:0046983
Lele33g0308 229 PRINTS MADS domain signature 15 35 IPR002100 GO:0003677|GO:0046983
Lele33g0308 229 SUPERFAMILY SRF-like 14 86 IPR036879 GO:0003677|GO:0046983
Lele33g0308 229 PANTHER MADS BOX PROTEIN 15 174 - -
Lele33g0308 229 Coils Coil 108 135 - -
Lele33g0308 229 ProSiteProfiles MADS-box domain profile. 13 73 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele33g0308 Lele-ChrLele33 1897998 1898687 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele33g0308 12 205 Type I MADS-box Gene Family AT2G24840 39.048 6.19e-39 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lele33g0308 SRF-TF 2.2e-22 No_clan