Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele33g0307 ATGGCGATGAACAAAAAGAGTAGTTCAGGTCGTCAAAAGATTCCGATCGTGAAAATACCAAAGAGAAGTAATTTACAAGTTACATTCTCAAAGCGTCGTTCAGGATTGTTCAAGAAAGCCAGTGAGCTCTGCACGCTTTGTGGGGTTGAAATCGCCATGATCGTATTCTCTCCAGCCAACAAAGCTTTCTCTTTTGGCCACCCAGGAGTTGAATCCATAATCGACCGTTACATAGCTGCTCGAAAATCTTCGCATCATGCAGAATCATCATCATCGTCATCAGCAACAATCACTAGTGTTCATCGGAATTCTAACGTTTGTAATCTGAATATGCAGTTAACACAGCTTCTTAATCAGTTGGAGATGGAGAAGAAGCAAGGAGAAGAACTCGATCGTACGAGGAAAGCGAGGCAGAGAGAGTTCTGGTGGGAGAGTCCAATCGATGAGATTGATTCAGTTGATCAGTTACAGCAATTGAGGAGTGCAATGGAGGAATTCACGAAGGATGTTTTAAGGCAAAAGAGTTTTATCGCGTCTTGTTCTTCATCTCAGATTATTGTTGGTGGGGAAGATTATCAATATGGATCGTTGTTCGGACGTTACGATGATGTCTTTGAGAACAAAGTAATACTAGGTGGTGGTGGTGCTGAGAATATTAATAATGTTGCTGCTACTAATTCGTCCAGTTTTATTCCTATTGATGGCTTTAACAATCTTATTTACCAAAACCACGACATGATGGGGATCTTTAAGTTTACTTCTCAGTTCTGA 771 0.4086 MAMNKKSSSGRQKIPIVKIPKRSNLQVTFSKRRSGLFKKASELCTLCGVEIAMIVFSPANKAFSFGHPGVESIIDRYIAARKSSHHAESSSSSSATITSVHRNSNVCNLNMQLTQLLNQLEMEKKQGEELDRTRKARQREFWWESPIDEIDSVDQLQQLRSAMEEFTKDVLRQKSFIASCSSSQIIVGGEDYQYGSLFGRYDDVFENKVILGGGGAENINNVAATNSSSFIPIDGFNNLIYQNHDMMGIFKFTSQF 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele33g0307 256 SUPERFAMILY SRF-like 10 85 IPR036879 GO:0003677|GO:0046983
Lele33g0307 256 CDD MADS_MEF2_like 10 77 IPR033896 GO:0000977|GO:0045944
Lele33g0307 256 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Lele33g0307 256 Gene3D - 22 93 IPR036879 GO:0003677|GO:0046983
Lele33g0307 256 Coils Coil 110 133 - -
Lele33g0307 256 Gene3D - 94 186 - -
Lele33g0307 256 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
Lele33g0307 256 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Lele33g0307 256 PANTHER MADS BOX PROTEIN 11 173 - -
Lele33g0307 256 FunFam Agamous-like MADS-box protein AGL62 21 87 - -
Lele33g0307 256 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Lele33g0307 256 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Lele33g0307 256 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele33g0307 Lele-ChrLele33 1892894 1893664 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele33g0307 8 171 Type I MADS-box Gene Family AT2G24840 53.293 7.43e-54 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lele33g0307 SRF-TF 1.2e-23 No_clan