Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele33g0306 ATGTCGACTTCAAGGAGGAGCAAGGGTCGCCAGAAGATTGAGATGAAGAAGATGACGAACGAGAGCAACTTGCAGGTAACCTTCTCGAAGCGTCGAACGGGGCTTTTCAAGAAAGCTAGTGAGATTTGTACTCTTTGTGGTGCTGAGGTTGCTCTCATCGTCTTCTCCCCCGGCGACAAGGTCTTCTCCTTCGGCCACCCCAGCGTCGACACCGTGGTGGATCGCTATCTCACGCGAGCCCCACCGCCACAGACCTCCGGCACCATGCAGCTCATTGAGGTTCACCGCAGCGCCAACGTTCGGGACCTCATCGGCCAGTTCACTCAAATCTCTGCCCAGCTCGACATCGAGAAGAAACGCACCGATGAATTGAATCACATGCGAAAGGCCACTCAAGGTCAGTGCTGGTGGGCAACTCCGATAGATGAGATGTCAAGGTCACAGCTTGAGGAGTTCAAGGCGGCGTTGGAGGAGCTAAAGAGGAGTGTGACGAGGCAGGCTGATAGGATGGTGCTGATTCAGAGTGCAAGTAACTCATCAAATCAATTTTTGGTCGGAGGTTCGTCTTCGAATGTGGTGGCTCTGCCACAGCCTCATCGGGTGTTTCAGTCGCCGCCGCCGATGGCGGTGGGTCCAAATCCTGCTGGGTTTGATGACAATATTGTGCCATCCCACCATGGATTTGGAGGAGCACCACCACCAGGGTTTTACTGA 714 0.5434 MSTSRRSKGRQKIEMKKMTNESNLQVTFSKRRTGLFKKASEICTLCGAEVALIVFSPGDKVFSFGHPSVDTVVDRYLTRAPPPQTSGTMQLIEVHRSANVRDLIGQFTQISAQLDIEKKRTDELNHMRKATQGQCWWATPIDEMSRSQLEEFKAALEELKRSVTRQADRMVLIQSASNSSNQFLVGGSSSNVVALPQPHRVFQSPPPMAVGPNPAGFDDNIVPSHHGFGGAPPPGFY 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele33g0306 237 CDD MADS_MEF2_like 9 78 IPR033896 GO:0000977|GO:0045944
Lele33g0306 237 Coils Coil 149 169 - -
Lele33g0306 237 FunFam Agamous-like MADS-box protein AGL62 20 86 - -
Lele33g0306 237 Gene3D - 89 184 - -
Lele33g0306 237 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Lele33g0306 237 SUPERFAMILY SRF-like 9 93 IPR036879 GO:0003677|GO:0046983
Lele33g0306 237 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Lele33g0306 237 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Lele33g0306 237 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Lele33g0306 237 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Lele33g0306 237 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Lele33g0306 237 PANTHER MADS BOX PROTEIN 10 166 - -
Lele33g0306 237 Gene3D - 20 88 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele33g0306 Lele-ChrLele33 1888845 1889646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele33g0306 5 191 Type I MADS-box Gene Family AT5G60440 57.143 2.24e-69 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lele33g0306 SRF-TF 3.4e-24 No_clan