Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele33g0294 ATGGCCAGTTTCGTAGGAACCACACAGAAATGCACCGTCTGTGACAAAACCGCCTACCCCGTCGATCGGTTGACCACCGACAGCCGTGTTTACCATAAGGCTTGCTTCCGATGCCACCATTGCCGGAATACCCTCAAGCTGAGCAACTATTGTTCATTTGAGGGCGTGCTATATTGCAGACCCCATTATGATCAACTCTACAAGAGAACTGGTAGCCTTGACAAGAGCTTTGAAGGAACACCCAAGATTCAAAAACCTGAAAAACAATCGGAGAATGAGAATGCAAAGGTTCTCTCAAATGTGTTCCTCGGCACCAAAGACAAATGCGCAGGTTGCCAAAAGACAGTTTATCCTACCGAGAGGATAACAGTGAATGGGACTCCATATCACAAAGGTTGCTTCAAGTGCAGCCATGGCGGCTGTACCATAACCTCAGCTAACTTCGTCTCTCACGAGGGAAAGCTATACTGCAAGCACCACCACGTTCAACTTTTCAAAGAAAAAGGCAATTACAGCCAGCTCGACGGCGACCGCGCCAGCAATCCTTCTTTGAAAGAAAACGAGGGTAATGTAGAAGGAGAGGCACAACTTTTTGATGGAGAACAAGGTTGTAACGATGACTGTACCTCGTTATGTGAAACAGAAAGCTCCCTGGTTTCAATGGATTCTTCTCCAACATGGCAAGAATATGCTTCATGTTCATCTTCTCGCGAGTTTGTTTCTCAATCTGATTTGGATCAGCAGCTTGCAGGGGATGTTACTCCGATGAGTGTTTCTCTTTCAGAGAGAGAAGAGAAGAATCGAGATCCACAGAAAGTGCTGGAAAAGCTGAACTTTCAGCTGTTAGATAAAAATGGAAGGGCGATGCCAATACAAGTGAAATATAGGACTTCTGTTGAGAAGAAGAAGAAGAAAGGTAGAAAAGAGTCAAATTCCTCACTCAACTGTTGA 951 0.4511 MASFVGTTQKCTVCDKTAYPVDRLTTDSRVYHKACFRCHHCRNTLKLSNYCSFEGVLYCRPHYDQLYKRTGSLDKSFEGTPKIQKPEKQSENENAKVLSNVFLGTKDKCAGCQKTVYPTERITVNGTPYHKGCFKCSHGGCTITSANFVSHEGKLYCKHHHVQLFKEKGNYSQLDGDRASNPSLKENEGNVEGEAQLFDGEQGCNDDCTSLCETESSLVSMDSSPTWQEYASCSSSREFVSQSDLDQQLAGDVTPMSVSLSEREEKNRDPQKVLEKLNFQLLDKNGRAMPIQVKYRTSVEKKKKKGRKESNSSLNC 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele33g0294 316 ProSiteProfiles LIM domain profile. 107 167 IPR001781 -
Lele33g0294 316 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 36 - -
Lele33g0294 316 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
Lele33g0294 316 MobiDBLite consensus disorder prediction 293 316 - -
Lele33g0294 316 FunFam LIM domain and actin-binding 1 5 75 - -
Lele33g0294 316 PANTHER OS06G0237300 PROTEIN 6 94 IPR045268 -
Lele33g0294 316 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 101 134 - -
Lele33g0294 316 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Lele33g0294 316 SMART lim_4 10 62 IPR001781 -
Lele33g0294 316 SMART lim_4 108 160 IPR001781 -
Lele33g0294 316 Pfam LIM domain 109 164 IPR001781 -
Lele33g0294 316 Pfam LIM domain 11 65 IPR001781 -
Lele33g0294 316 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Lele33g0294 316 CDD LIM2_SF3 109 169 - -
Lele33g0294 316 Gene3D Cysteine Rich Protein 104 173 - -
Lele33g0294 316 Gene3D Cysteine Rich Protein 5 75 - -
Lele33g0294 316 FunFam LIM domain and actin-binding 1 103 173 - -
Lele33g0294 316 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 135 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele33g0294 Lele-ChrLele33 1789694 1792262 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Lele33g0294 LIM 1.1e-12 CL0167