Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele33g0282 ATGGCTTTAGAGGCTCTGAATTCTCCCACTACTGCCCCAGCTTCTTTCACCTTCAAGCACGAGGAAGAAGAAGATGATGAGCTTGATCTTCACTGGGCTAAGGGCAAGCGCTCCAAACGACCTCGTTTCGACGCCGACAACCCTCCTTCTGAGGAAGAGTACCTCGCTCTCTGTCTCATCATGCTCGCTCAAAGCGGCCACAACAACGCCGCCTCCGCCTCGGCCGCCGCCTCTCCGCTGCGTCCTTCATCTTCATCGTCGCCTCCTAATAATCCTGTGAAGCCGTCTCATAGGTGTTCCGTCTGTAATAAAGTCTTCTCCTCTTACCAAGCGCTCGGTGGCCACAAGGCCAGCCACCGTAAGTCCTCCTCCGAATCCACCGCCAACGCTTCTGCCGTCGCCTCGGCCGACAACGTCTCCACTTCCTCTGCTACCGTCACGGGAAGGATGCACGAGTGTTCCATCTGTCACAAGGTCTTCCCTACCGGTCAGGCCTTGGGTGGACACAAGAGATGTCACTACGATGGCGGCAACGCGAACAGCAGTAGCGCCGGCGCCGGCGTTTCCTCATCAGAGGGAGGTGGCGCGTCTACTGTAAGCCTCCGGGGATTCGACTTAAACCTGCCGGCACCGCTGATGGACTTATCCCCGGCAGGATTTGGCTCCAGCTCCGATTCCGGTATGAAGAAGATCGGCGTAGAGCAAGAGGTGGAAAGTCCGTTACCGGTGGGAGCGGGTAATAAGAGAAGTCGTGTGCTTTTCACCGGCGAAGAAGACGATGTAAAGCCTTCGTGA 795 0.5698 MALEALNSPTTAPASFTFKHEEEEDDELDLHWAKGKRSKRPRFDADNPPSEEEYLALCLIMLAQSGHNNAASASAAASPLRPSSSSSPPNNPVKPSHRCSVCNKVFSSYQALGGHKASHRKSSSESTANASAVASADNVSTSSATVTGRMHECSICHKVFPTGQALGGHKRCHYDGGNANSSSAGAGVSSSEGGGASTVSLRGFDLNLPAPLMDLSPAGFGSSSDSGMKKIGVEQEVESPLPVGAGNKRSRVLFTGEEDDVKPS 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele33g0282 264 ProSiteProfiles Zinc finger C2H2 type domain profile. 151 173 IPR013087 -
Lele33g0282 264 SMART c2h2final6 97 119 IPR013087 -
Lele33g0282 264 SMART c2h2final6 151 173 IPR013087 -
Lele33g0282 264 MobiDBLite consensus disorder prediction 17 48 - -
Lele33g0282 264 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 37 210 IPR044653 GO:0003700
Lele33g0282 264 ProSitePatterns Zinc finger C2H2 type domain signature. 153 173 IPR013087 -
Lele33g0282 264 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 124 IPR013087 -
Lele33g0282 264 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
Lele33g0282 264 MobiDBLite consensus disorder prediction 123 141 - -
Lele33g0282 264 MobiDBLite consensus disorder prediction 73 97 - -
Lele33g0282 264 MobiDBLite consensus disorder prediction 217 264 - -
Lele33g0282 264 Gene3D Classic Zinc Finger 95 173 - -
Lele33g0282 264 Pfam C2H2-type zinc finger 97 121 - -
Lele33g0282 264 Pfam C2H2-type zinc finger 151 175 - -
Lele33g0282 264 MobiDBLite consensus disorder prediction 1 48 - -
Lele33g0282 264 MobiDBLite consensus disorder prediction 116 141 - -
Lele33g0282 264 SUPERFAMILY beta-beta-alpha zinc fingers 97 173 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele33g0282 Lele-ChrLele33 1723066 1723860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele33g0282 1 242 C2H2 Transcription Factor Family AT1G27730 42.570 9.55e-46 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele33g0282 zf-C2H2_6 9.2e-13 CL0361