Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele33g0206 ATGGCTCAACCCACCAACACGGCGGATCTAAATCAGCACCAGCATCAGCAGCAGTGGACGTCGCAGCAGCCGCATCACTATCAGCAGCAATGGATGGCTATGCAATACCCTGCTGCGGCCATGGCCATGATGCAGCAGCAGATGATGTATCCACAACATTACATGCCTTACGTCCACCATTACATGCCTCCGCACCAGCACCAGCACCAGCACCAGCAGCAACTCAAGCCGCAGCCGTATCAGCAGCAACAGCAAGGGTCCTCCGATGAGATCAGGACGATATGGCTCGGTGACCTTCATCATTGGATGGATGAGAACTACCTACACAACTGTTTTGCTCATACCGGCGAGGTTGTCTCTGCCAAGGTTATACGTAATAAGCAAACTGGCCAGTCAGAGGGCTATGGATTTGTTGAGTTTTATTCACGTGCAACAGCTGAGAAAGTTTTGAACAGCTACAATGGTACTATGATGCCAAATACCGATCAGCCCTTCCGTCTAAATTGGGCTACTTTCAGCGCGGGTGATAGGAGATCTGATGCTAGTTCTTCTGATCTGTCTATATTTGTTGGGGACCTGGCTATAGATGTTAGTGATGCTATGCTGCACGAAACCTTTGCTAGCAGATATACATCTGTAAAGGGAGCAAAGGTCGTCATTGATCCAAATACTGGCCGTTCAAAAGGTTATGGTTTTGTAAGGTTTGGTGATGAAACTGAGAGGACTAGGGCCATGACTGAAATGAATGGATGCTATTGTTCAAATCGGCCTATGCGTATAGGTGTTGCAACCCCAAAGAAGTTCCATGGGTATCAACAACAATATTCTTCCCAAGCTGTAGTATTAGCTAATGGACATTCATCTAATGGTGCTACCACACAAGGTTACCAGCCTGAAGGGGACTCAATTAACACAACTATTTTTGTTGGGGGCCTTGATTCTGATGTTAGAGATGATGATCTCAGACAACCATTTTTGCAATTTGGTGAGGTTGTCTCGGTCAAAATACCTGTGGGTAAAGGTTGTGGTTTTGTTCAATTTTCTGACAGAAAGAATGCTGAGGAAGCACTTCAAGCATTGAACGGGACAGTAATTGGGAAGCAGACCGTACGTCTTTCTTGGGGTCGCAGTCCTGGAAATAAGCATTGGAGAACAGATTCCAATGGAGGTCACTATGGAAGCCAGGGGTCTGCCATGCGACAAAACCAAGATATCAGTATGAACGTTGCTGCTGCAGTTCAAGGGGCATCCTGA 1254 0.4681 MAQPTNTADLNQHQHQQQWTSQQPHHYQQQWMAMQYPAAAMAMMQQQMMYPQHYMPYVHHYMPPHQHQHQHQQQLKPQPYQQQQQGSSDEIRTIWLGDLHHWMDENYLHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLNSYNGTMMPNTDQPFRLNWATFSAGDRRSDASSSDLSIFVGDLAIDVSDAMLHETFASRYTSVKGAKVVIDPNTGRSKGYGFVRFGDETERTRAMTEMNGCYCSNRPMRIGVATPKKFHGYQQQYSSQAVVLANGHSSNGATTQGYQPEGDSINTTIFVGGLDSDVRDDDLRQPFLQFGEVVSVKIPVGKGCGFVQFSDRKNAEEALQALNGTVIGKQTVRLSWGRSPGNKHWRTDSNGGHYGSQGSAMRQNQDISMNVAAAVQGAS 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele33g0206 417 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 161 IPR000504 GO:0003723
Lele33g0206 417 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 307 370 IPR000504 GO:0003723
Lele33g0206 417 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 257 IPR000504 GO:0003723
Lele33g0206 417 Gene3D - 283 407 IPR012677 -
Lele33g0206 417 FunFam Polyadenylate-binding protein RBP47B 178 276 - -
Lele33g0206 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 265 IPR000504 GO:0003723
Lele33g0206 417 MobiDBLite consensus disorder prediction 1 23 - -
Lele33g0206 417 MobiDBLite consensus disorder prediction 64 88 - -
Lele33g0206 417 SUPERFAMILY RNA-binding domain, RBD 186 378 IPR035979 GO:0003676
Lele33g0206 417 Gene3D - 55 183 IPR012677 -
Lele33g0206 417 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 72 381 - -
Lele33g0206 417 SMART rrm1_1 187 261 IPR000504 GO:0003723
Lele33g0206 417 SMART rrm1_1 93 168 IPR000504 GO:0003723
Lele33g0206 417 SMART rrm1_1 306 373 IPR000504 GO:0003723
Lele33g0206 417 MobiDBLite consensus disorder prediction 376 398 - -
Lele33g0206 417 FunFam polyadenylate-binding protein RBP47 isoform X2 40 177 - -
Lele33g0206 417 CDD RRM2_SECp43_like 185 264 - -
Lele33g0206 417 CDD RRM1_SECp43_like 93 173 - -
Lele33g0206 417 Gene3D - 185 262 IPR012677 -
Lele33g0206 417 MobiDBLite consensus disorder prediction 67 88 - -
Lele33g0206 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 172 IPR000504 GO:0003723
Lele33g0206 417 FunFam Polyadenylate-binding protein RBP47 287 402 - -
Lele33g0206 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 305 377 IPR000504 GO:0003723
Lele33g0206 417 CDD RRM3_NGR1_NAM8_like 304 375 - -
Lele33g0206 417 SUPERFAMILY RNA-binding domain, RBD 64 175 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele33g0206 Lele-ChrLele33 1289307 1293132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele33g0206 94 384 Eukaryotic Initiation Factors Gene Family AT4G34110 28.477 5.56e-25 105