Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele33g0109 ATGAAACGAGGTAGAAAGTCTTACAAGAGTCTCAAATCATTACTCGAGCAAGAGGATCATGGACACCCTCTTCTCAAGAAAGACAATCTACAGGGGTTATCTTGTAACCAGTCTGCAATTCCATCCACAACTATGAGCTATGCCAACTTGCCAATTGGTCAGTTTTCAGGCCATCGGCCTATTAACGCTTTTACGTCGCCATTTATGGAGTCACCAGCAGTTGGTCTGCTTCCGGCTAAACACCCTGCAGATGGATTTAATTCAGAGAAACACAAAAGATTAAAAGTTGTAGACTATAGCAATCCATATGCAATTGCGGACTTGCTTGATGGCCTGAACCACGGAAAATTTGGAAGTGTCACCAAGGATATAGAGTCCCTTATTGCTCAAAAGATGCAGACATTGAGCCCTATATTTGCAAAAGATCCTGCACTTCTACAGTTTGTGAAAGTGGGAATGAATCGTGATGAAGAAGCTGCTAAGAAAATCATAGATTTGGAGGATAATCCCATGAAAAAAATTGCTTCAAAAGCATCATCAACTGTTGTAATTATTGATTCAGATGAGGAAGATGATAGAGATAAGAAACCTTGTCTGTCATTTCAAGAAGTTATACTGCCAAAACCTGTTGTCCGGTATACTACAAAAGACATAGTTGAGTACCATGGTCCCAATGCACATCATCCTCCTATTGGGTGTCATGCTGGAAGTTTAGATGCAAAACCTGAACCTTTTCTCGTTGGCAAAGATGACATTGGAAAAGATAAAGGCGCTTTTATTGGTGTTCAAGAGGAAGACAGTCCACAGGCTGACACAAAGGATGATGGGCTAGAAGATATTTGGAGGGAGATGTCAATGGCAATAGAATGTTCCAAAGATGTTGATATGGATTCTCTACATGATGAAGCTGAAAAGGATGTGGGTGACTGTGATCACTCTTATGTTTTAAAAGATGATCTTGGTTATGTTTGTCGCGTTTGTGGGGTTATCGACAGAGGAATTGAAACCATATTTGAATTCCAGTACAAGGTTAAAAAGAGTTCAAGAACTTACATGGCTGATTCACGGAATTTCAAAGAGAGAACAGCGCCTGATGTATCGGGACTTAAATTTGGTGAAGATGGTCTGGTAATATCTGAACTCTCTGCTCACCCCAGGCATATGAAGCAAATGAAACCTCATCAAGTTGAAGGATTTAATTTTCTTGTCAGAAACCTTGCGGGTGACAATCCTGGTGGCTGCATCTTGGCCCATGCTCCTGGTTCTGGGAAGACATTCATGATAATCAGTTTCATGCAAAGCTTTCTTGGCAAGTATCCTAATGCCCGACCCCTTGTGGTTCTTCCTAAGGGAATATTGGCTACTTGGAAAAAAGAGTTTCAAACATGGCAAGTGGAGGACATTCCACTCTATGATTTTTACTCCGCTAAGGCAGACAGTCGGTCTCAGCAGTTGGAAGTTTTGAAAAAGTGGGTAGAGCAGAAGAGTATTCTTTTCCTAGGATACAAACAATTCTCTTCAATTGTCTGTGATACTGGAACTAGCCAGGTATCCACATCTTGCCAAGAGATATTGCTTAGGGCCCCCTCTATTCTCATTTTAGATGAGGGACACACACCCAGGAATGACAATACTGACATAGTTCAGTCCCTTACCAAAGTGCAAACATCTCGGAAAGTTGTACTATCAGGAACCCTGTATCAAAATCATGTCAAAGAGGTATTCAACATTTTGAACATTGTGCGTCCACCAAATTTTCTACGCTCACAGACATCTCGACCTATTGTCAGGCGTATTAAGAGTAGAGTACATGTACCTGGGGTGAAGGATTTCTGTGACTTGGTGGAGAACACTTTGCAGAAAGACCCTGATTTTAAAAGGAAAGTGGCTGTCATTCAAGATTTGCGTGAGATGACAGGCGAGGTACTTCATTACTACAAGGGAGATTTTCTTGATGAGCTTCCTGGCCTTGTAGATTTCGCAGTTGTGCTCAATCTTACTTCCCGACAGAAGCATGAAGTCCATAAGCTAAAGCACTTATCCAGAAAGTTTAAGATAAGCTCTGTTGGAAGTTCAGTTTATCTTCATCCTAAATTAAAGCCTATGGCAGAAAATTGTGCTGAGAATTCTGCTGTATCTGATCACACGATGGATGAGATGATAGAGAGCCTAGATTTGGAAGATGGGGTGAAGTCAAAATTCTTTCTTAAAATGCTGAGCCTATGTGAATCAAGTAGGGAGAAGCTTCTAGTCTTTAGCCAATATCTCTTGCCTTTGAAGTACTTAGAAAGGTTAACTATGAAACGGAAGGGATGGAGTCCTGGAAAAGAGATATTTGTCATATCAGGTGAATCCAGCTCTGAACAAAGAGAATGGTCCATGGAGCAGTTTAACAATTCACCAGATGCTAAAGTCTTCTTTGGCTCAATCAAGGCATGTGGAGAAGGCATATCTTTGGTTGGGGCATCACGCATAATTATTTTGGACGTTCATCTAAATCCATCAGTTACACGCCAAGCAATTGGCCGTGCATTCCGACCAGGTCAGACAAAGAAAGTCTTTGCATATCGGTTGATAGCTGCTGATTCTCCTGAACAGGAAGACCATGATACTTGTTTCAAGAAGGAATTGATATCAAAAATGTGGTTTGAATGGAATGAGTATTGTGGTTTTCATGATTTTGAAGTTGAGACCGTTGATGTGGAACAGTGTGGTGATGTCTTTCTGCAAACTCAATTGATAAGGGATGATATAAAAATTCTGCATAGAAGGCCTTGA 2778 0.4096 MKRGRKSYKSLKSLLEQEDHGHPLLKKDNLQGLSCNQSAIPSTTMSYANLPIGQFSGHRPINAFTSPFMESPAVGLLPAKHPADGFNSEKHKRLKVVDYSNPYAIADLLDGLNHGKFGSVTKDIESLIAQKMQTLSPIFAKDPALLQFVKVGMNRDEEAAKKIIDLEDNPMKKIASKASSTVVIIDSDEEDDRDKKPCLSFQEVILPKPVVRYTTKDIVEYHGPNAHHPPIGCHAGSLDAKPEPFLVGKDDIGKDKGAFIGVQEEDSPQADTKDDGLEDIWREMSMAIECSKDVDMDSLHDEAEKDVGDCDHSYVLKDDLGYVCRVCGVIDRGIETIFEFQYKVKKSSRTYMADSRNFKERTAPDVSGLKFGEDGLVISELSAHPRHMKQMKPHQVEGFNFLVRNLAGDNPGGCILAHAPGSGKTFMIISFMQSFLGKYPNARPLVVLPKGILATWKKEFQTWQVEDIPLYDFYSAKADSRSQQLEVLKKWVEQKSILFLGYKQFSSIVCDTGTSQVSTSCQEILLRAPSILILDEGHTPRNDNTDIVQSLTKVQTSRKVVLSGTLYQNHVKEVFNILNIVRPPNFLRSQTSRPIVRRIKSRVHVPGVKDFCDLVENTLQKDPDFKRKVAVIQDLREMTGEVLHYYKGDFLDELPGLVDFAVVLNLTSRQKHEVHKLKHLSRKFKISSVGSSVYLHPKLKPMAENCAENSAVSDHTMDEMIESLDLEDGVKSKFFLKMLSLCESSREKLLVFSQYLLPLKYLERLTMKRKGWSPGKEIFVISGESSSEQREWSMEQFNNSPDAKVFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQTKKVFAYRLIAADSPEQEDHDTCFKKELISKMWFEWNEYCGFHDFEVETVDVEQCGDVFLQTQLIRDDIKILHRRP 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele33g0109 925 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 734 902 IPR001650 -
Lele33g0109 925 SMART ultradead3 387 591 IPR014001 -
Lele33g0109 925 SMART helicmild6 760 848 IPR001650 -
Lele33g0109 925 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 529 886 IPR027417 -
Lele33g0109 925 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 405 584 IPR014001 -
Lele33g0109 925 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 264 922 IPR044567 GO:0080188
Lele33g0109 925 Pfam Helicase conserved C-terminal domain 737 847 IPR001650 -
Lele33g0109 925 Gene3D - 655 903 IPR027417 -
Lele33g0109 925 Pfam SNF2-related domain 411 626 IPR000330 GO:0005524|GO:0140658
Lele33g0109 925 CDD SF2_C_SNF 731 859 - -
Lele33g0109 925 Gene3D - 369 605 IPR038718 -
Lele33g0109 925 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 380 586 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele33g0109 Lele-ChrLele33 698273 705172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele33g0109 745 866 RAD5 or RAD16-like Gene Family AT5G43530 35.246 9.75e-14 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele33g0109 SNF2_N 6.9e-22 CL0023