Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele33g0107 ATGGGCAAGAAGAAAGTGAAGGAAAGTGGAGTGAAAGAGCACTGCCCCTCGACTGTGTTTCTGGAGGAGACGTTTGGCGAAGTTGGACCAATCAGGCGTTGCTTCATGGTCATGCAGAAGGGTAGGGAAAAAATGATTACTCCTCCAGTGACATGTTATCTGGATTATGGTGTTTCAGGCGTGTGTTATTGATCATCTCAGCATCGTGGTTTTGGTTATGTTCAATTTGCTGTTGAGGAAGATGCTAACCGTGCAATTGAGTTGAAGAATGGTTCATCCATTGGAGGCCGGAAAATTGCAGTAAAGCATGCTACGCCTCGTCCTCCCCGTGAAGCACGACAGTCAAAGTCAAATCAAGGTTATTGCTACATTAAATCTAGTTCAGCATGCTGCAATGCTTATAGACACACTTATACATACTTCATGGAAGATGTGCAAATGAGTGAATGTTGTCAATATTCTTTTTTTTCCTTTGTCTTCTTTTCTGATTCTGAATTTGATCATGCTATAGTGGAGAATGCAGATGATATCCCAAAGTTGAAAAATGATGACGATGATGGTGGATTTTCTGGCGTGGAGAAGCCTTCTTCAGTTATTAAGGAAAAAGTTGTAAATAATGAAAACCATTCAACGAAGCCTAGTGAAGTGAAAAAAGCAGTTCTTTGTAGTGATATAGCAGATGAGGGAGGTTGTTCTGAAAAACAGAGGGTTGCTAGAACTGTCATATTTGGTGGTCTTATCAATTCGGATATGGCTGAAGTTGTTCACAGCCGAGCAAGGGAGATTGGCATTGTGTGTTCTATGAAGTACCCCCTTCCTAGGGAAGAATTTGAACAGCATGGTCTCTTTCAAGATGGATGTAAATTGGATGCTTCAACTGTACTTTACACAAGTGTGAAATCAGCACGAGCTTCTGTTGCGTTGCTGCATCAGAAAGAAATTGGAGGAGGAACTGTTTGGGCACGTCAATTGGGTGGAGAGGGCTCCAAGACACAAAAATGGAAGCTTATTGTTAGAAATCTTCCATTCAAGGCCAAGGAAAATGAAGTAAAAGAAATGTTTTTATCTGCTGGTTTTGTGTGGGATGTATTTATTCCCCGCAAGTCTGATACAGGATTGTCCAAGGGTTTCGCATTTGTGAAATTCACTTGCAAGCAAGATGCAGAAAATGCTATTCAGAAACTTAATGGATCAAAGTTTGGTAAACGGTTCATAGCTGTTGATTGGGCTGTTCCAAAGAAGATATATAGCAGTGATGCAAATGCTATGCTTGCTTTAGAAAATGGACAACACAAGGTGACAGATGAAGATGGTAGTAGTTCAGAGGACAATTCAGAGGATGATGTTGAGGAGACAGGCAAACAGGCCCATCAAGAAGATGATACTGATCTAGATGACTCTAGCTTCTCACATGAAGATGTACCATCTGAAGTTAACTTTGATAAGGAGGCAGAGATTGCCAAAAAGGTTATTAAGAACCTAATCACATCCTCCACCAAAGGAACATCCGCAAATGATGATTCTATGTTGTCCAAGAAAAACAAGGAACCAAAATCCGATGAAAATGTTAATGAGGAAAAGGTTACAGATGTTTCTGAGCCTGAAATCTTGGACAAAAGCAAGATATCTAATCTTAAGCAAACAGAAGAAGATTTGCAGGGAACAGTTTTTATAAGTAATCTTCCCTTTGACTGTGATAATGAAGAAGTGAAACAACGATTCTCTGGATTTGGGGAAGTGGACTACTTTAAACCAGTCCTCCACCAGGTGACCAAACGGCCAAGAGGAACTGGTTTTCTCAAGTTTAAAACTGCAGATGCAGCTGATGCTGCAGTTTCAACTGCTAGTGCTGCTTCTGGCTTGGGTATTCTTCTCAAAGGTAGGCCATTAAAAGTTTTGAGGGCTTTAGATAAGAAGTCGGCTCATGACAAGGAACTAATGAAGGCCAAAACTGACAACCATGACCATCGCAATCTTAACCTGGCAAAGGAAGGACTCATTCTTGAAGGAACTCCAGCTGCTGAAGGGGTTTCAGCCAGTGATATGTTAAAACGCCAGGAGTTGGAAAGAAAAAAGGCAACAAAGCTACAATCGCCAAATTTTCATGTTTCAAGAACTAGACTTGTTATTTACAACTTACCAAAGTCGATGACTGAAAAAGAGCTCAAGAAGCTTTGCATTGATGCAGTTACCTCTAGAGCAACCAAGCAAAAGCCTCAAATTCGGCAGATAAAGTTCATGAAGGATGTGAAGAAAGGAAAGGTTGTTACAAAACATCATTCACGTGGAGTTGCCTTTGTTGAATTTTCAGAGCATCAACATGCCCTTGTGGCTCTAAGAGTTCTCAATAATAATCCAGAAACTTTTGGTCCTGAACACCGGCCAATTGTGGAGTTTGCTGTTGATAATGTTCAAACACTTAAACATCGGAAAGCAAAGCTACAGTTTCATCAGCAGGCTGCTGCTCATGGTGACAGCAACGTCGAGGAAAATGAGGAACCCCATGTTCCAGGTTTCCATACAAATGGAAAGGATAGAAAACGAAAATTACAGGATCATGACAAGTCAGTGAAGGATTCAGTACTCGATAAAGAAGACATATCAGCAAGTATATTACCAAATAAAAATGCCATGGTAGCACGCAATGCCAAAAGGCTGAAAAAAGGCAACCATAAAAGTAATAAGGCAGAAGCGTCTTCGTCACATAAAGAAAATTCAGAAACCTTGTCCATGAAGCCGAATAATTACCAAGATGACCAGAATCATGGTGGTAGGACGTCAAACACTGTTATTGACTCCCACAAAGCAATCAAGGGTAAAAAAGTAGACCATGGACTGAAGAAGAGGAGGATGCAGAATCAAGCAGAAGCTGGGGAAAATGTACCGAGGAAACGATCAAAAAAGAATAAAGAGCCTGTAGGGAAGGACGTGGTAGATAAACTTGACATGCTTATACAGCAATATAAATCGAAGTTCTCACAACAGGGTTCGCAAGGGAGTGATGGAGGGAAAAAACCTTCCAAACAGTTAAGAAAATGGTTTGAACCATAA 3051 0.4074 MGKKKVKESGVKEHCPSTVFLEETFGEVGPIRRCFMVMQKGREKMITPPVTCYLDYGVSGVCYXSSQHRGFGYVQFAVEEDANRAIELKNGSSIGGRKIAVKHATPRPPREARQSKSNQGYCYIKSSSACCNAYRHTYTYFMEDVQMSECCQYSFFSFVFFSDSEFDHAIVENADDIPKLKNDDDDGGFSGVEKPSSVIKEKVVNNENHSTKPSEVKKAVLCSDIADEGGCSEKQRVARTVIFGGLINSDMAEVVHSRAREIGIVCSMKYPLPREEFEQHGLFQDGCKLDASTVLYTSVKSARASVALLHQKEIGGGTVWARQLGGEGSKTQKWKLIVRNLPFKAKENEVKEMFLSAGFVWDVFIPRKSDTGLSKGFAFVKFTCKQDAENAIQKLNGSKFGKRFIAVDWAVPKKIYSSDANAMLALENGQHKVTDEDGSSSEDNSEDDVEETGKQAHQEDDTDLDDSSFSHEDVPSEVNFDKEAEIAKKVIKNLITSSTKGTSANDDSMLSKKNKEPKSDENVNEEKVTDVSEPEILDKSKISNLKQTEEDLQGTVFISNLPFDCDNEEVKQRFSGFGEVDYFKPVLHQVTKRPRGTGFLKFKTADAADAAVSTASAASGLGILLKGRPLKVLRALDKKSAHDKELMKAKTDNHDHRNLNLAKEGLILEGTPAAEGVSASDMLKRQELERKKATKLQSPNFHVSRTRLVIYNLPKSMTEKELKKLCIDAVTSRATKQKPQIRQIKFMKDVKKGKVVTKHHSRGVAFVEFSEHQHALVALRVLNNNPETFGPEHRPIVEFAVDNVQTLKHRKAKLQFHQQAAAHGDSNVEENEEPHVPGFHTNGKDRKRKLQDHDKSVKDSVLDKEDISASILPNKNAMVARNAKRLKKGNHKSNKAEASSSHKENSETLSMKPNNYQDDQNHGGRTSNTVIDSHKAIKGKKVDHGLKKRRMQNQAEAGENVPRKRSKKNKEPVGKDVVDKLDMLIQQYKSKFSQQGSQGSDGGKKPSKQLRKWFEP 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele33g0107 1016 SUPERFAMILY RNA-binding domain, RBD 330 416 IPR035979 GO:0003676
Lele33g0107 1016 MobiDBLite consensus disorder prediction 903 933 - -
Lele33g0107 1016 MobiDBLite consensus disorder prediction 450 481 - -
Lele33g0107 1016 Gene3D - 705 800 IPR012677 -
Lele33g0107 1016 SUPERFAMILY RNA-binding domain, RBD 21 120 IPR035979 GO:0003676
Lele33g0107 1016 MobiDBLite consensus disorder prediction 427 481 - -
Lele33g0107 1016 MobiDBLite consensus disorder prediction 819 861 - -
Lele33g0107 1016 MobiDBLite consensus disorder prediction 826 861 - -
Lele33g0107 1016 CDD RRM3_RBM28_like 555 635 - -
Lele33g0107 1016 CDD RRM2_RBM28_like 335 411 - -
Lele33g0107 1016 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 554 637 IPR000504 GO:0003723
Lele33g0107 1016 MobiDBLite consensus disorder prediction 509 526 - -
Lele33g0107 1016 MobiDBLite consensus disorder prediction 987 1004 - -
Lele33g0107 1016 MobiDBLite consensus disorder prediction 948 978 - -
Lele33g0107 1016 FunFam RNA-binding motif protein 28 705 800 - -
Lele33g0107 1016 CDD RRM4_RBM28_like 706 803 - -
Lele33g0107 1016 Gene3D - 322 459 IPR012677 -
Lele33g0107 1016 Gene3D - 17 131 IPR012677 -
Lele33g0107 1016 MobiDBLite consensus disorder prediction 499 526 - -
Lele33g0107 1016 SUPERFAMILY RNA-binding domain, RBD 551 640 IPR035979 GO:0003676
Lele33g0107 1016 SMART rrm1_1 707 798 IPR000504 GO:0003723
Lele33g0107 1016 SMART rrm1_1 5 102 IPR000504 GO:0003723
Lele33g0107 1016 SMART rrm1_1 555 633 IPR000504 GO:0003723
Lele33g0107 1016 SMART rrm1_1 335 408 IPR000504 GO:0003723
Lele33g0107 1016 Gene3D - 495 651 IPR012677 -
Lele33g0107 1016 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 336 405 IPR000504 GO:0003723
Lele33g0107 1016 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 66 99 IPR000504 GO:0003723
Lele33g0107 1016 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 556 614 IPR000504 GO:0003723
Lele33g0107 1016 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 708 784 IPR000504 GO:0003723
Lele33g0107 1016 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 21 106 IPR000504 GO:0003723
Lele33g0107 1016 MobiDBLite consensus disorder prediction 876 1016 - -
Lele33g0107 1016 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 706 819 IPR000504 GO:0003723
Lele33g0107 1016 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 334 412 IPR000504 GO:0003723
Lele33g0107 1016 SUPERFAMILY RNA-binding domain, RBD 697 805 IPR035979 GO:0003676
Lele33g0107 1016 PANTHER RNA-BINDING MOTIF PROTEIN 14B 21 1015 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele33g0107 Lele-ChrLele33 683044 689587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele33g0107 338 413 Eukaryotic Initiation Factors Gene Family AT3G11400 38.158 6.80e-11 63.2