Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele33g0106 ATGGCTAAACCGAAGGCTCCCAGACGAACCCTAGAGTCATACACAGTCAAACACATAAGCAAAACCGTTAGAGCCGGCGACTGCGTTCTTATGCGGCCCTCCGAGCCGTCGAAGCCGTCCTACGTGGCTAGGATCGAGCGGATCGAGGCCGACTCTCGAGGCGCCAACGTTAAGCTTCAGGTCCGTTGGTACTATCGGCCGGAGGAGTCTATCGGTGGCCGTCGACAGTTCCACGGTTCTAAAGAAGTTTTCCTCTCTGATCACTTTGACGTTCAGAGCGCCGACACGATCGAAGGCAAGTGTACGGTTCACAGTTTTAAGGGCTACACGAAGCTTGATGCTGTCGGGAATGACGATTTCTTCTGCCGTTTCGAATATAATTCCGCCTCCGGAGCATTCAATCCAGATAGAGTTGCCGTGTATTGCAAATGTGAGATGCCCTACAACCCCGATGACCTAATGGTTCAGTGTGAGGGCTGTAGTGATTGGTTTCATCCTGCTTGTATAGACATGACTGTGGAGGAAGCCAAAAGACTTGATCACTTCTTTTGTGAAAGTTGTTCTGCGGAAGATCAAAATAAATTGCCAAATTCTCATGCTGGGAGACATTCAGATACAAAGCAGGATAGGAACCTGTGGATACAAAACGCCGTCGAAGAAAGACCGGTTTGGAAATATGATTGTCGTATCTATTTGGTTTTAAGACTTATCCTGTTTACTTTGAAAGTCGAGGATGTGTTTGCTTGTTTGTAA 753 0.4781 MAKPKAPRRTLESYTVKHISKTVRAGDCVLMRPSEPSKPSYVARIERIEADSRGANVKLQVRWYYRPEESIGGRRQFHGSKEVFLSDHFDVQSADTIEGKCTVHSFKGYTKLDAVGNDDFFCRFEYNSASGAFNPDRVAVYCKCEMPYNPDDLMVQCEGCSDWFHPACIDMTVEEAKRLDHFFCESCSAEDQNKLPNSHAGRHSDTKQDRNLWIQNAVEERPVWKYDCRIYLVLRLILFTLKVEDVFACL 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele33g0106 250 SMART PHD_3 141 188 IPR001965 -
Lele33g0106 250 Gene3D - 2 135 IPR043151 -
Lele33g0106 250 ProSiteProfiles Zinc finger PHD-type profile. 139 190 IPR019787 -
Lele33g0106 250 FunFam Bromo-adjacent homology (BAH) domain-containing protein 134 206 - -
Lele33g0106 250 SUPERFAMILY FYVE/PHD zinc finger 132 191 IPR011011 -
Lele33g0106 250 Pfam PHD-finger 141 189 IPR019787 -
Lele33g0106 250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 202 IPR013083 -
Lele33g0106 250 ProSiteProfiles BAH domain profile. 21 137 IPR001025 GO:0003682
Lele33g0106 250 Pfam BAH domain 22 136 IPR001025 GO:0003682
Lele33g0106 250 ProSitePatterns Zinc finger PHD-type signature. 142 187 IPR019786 -
Lele33g0106 250 PANTHER OS08G0421900 PROTEIN 5 205 - -
Lele33g0106 250 SMART BAH_4 21 137 IPR001025 GO:0003682
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele33g0106 Lele-ChrLele33 678626 682129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele33g0106 41 139 Core DNA Replication Machinery Family AT4G14700 30.303 4.76e-09 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele33g0106 BAH 1.5e-21 No_clan