Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele33g0102 ATGTCCACACCTGTTGCAGCCACGCCCACATCCACTGATGATGCGCCCATGTCATCAGAAGGCGGAGAGGGTTACAATGCAGACGATATTAGGCCTACCTTCGTCTGGGGTACTAATATAAGCGTTGAAGACGTGCATGAGGCGACTCAGAGGTTTTTAAAGCACTTCAGAGAGAAATCATCTCAGAGCGATGGGCTGCATATGGAGGGGAAATATGAGACGGCTATCAAACAAGTCATTGAAATCGAGGGAGAGTCACTAGACGTTGATGCACACGAAGTATTTGATTATGATCCGGACTTGTACACAAAAATGGTCAGATACCCGCTCGAGGTTCTTGCAATTTTTGATTTGGTTCTGATGAATATGGTTAGTAGAATCAACCCGTTGTTCGAGAAGCACATTCAAACTCGAATTTTTAATCTAAAAACCTCGACTTCGATGAGAAATTTGAATCCATCTGATATTGAGAGGATGGTATCATTGAAGGGAATGATTATTCGATGTAGCTCAATTATACCAGAAATCAAGGAAGCTATATTTAGATGTCTCGTGTGTGGATACTGCTCAGAAACGGTTGCCGTAGAGAGAGGGCGAATAGCTGAACCTACTAAATGTGTGAGGGAAGAGTGTCAAGCCAGAAACTCCATGACACTTGTTCACAACCGATGCAGTTTCACCGACAAGCAAATTGTGAGGCTCCAGGAGACCCCTGATGAGATACCTGAAGGGGGAACACCACACACAGTAACCTTGCTGATGCATGACAAGCTGGTGGATGCTGGAAAGCCGGGTGACAGAGTTGAGGTGACTGGTATATATAGGGCTATGAGTGTCAGGACCTATATTGACTGTCTTTATATTAAGAAGACTGATAAGTCAAGAATGATGTCAGAGGATGCAATGGATGTTGAAACTAGCCTGGGCAACAGAAATACAAAAGAAATTCATTTTGATGAAGAGAAGGTGGCTCAACTAAAGGAGCTCTCAAAACAGCCGGATGTATATGAAAGGCTGACAAAGTCATTGGCTCCAAACATCTGGGAGCTAGATGATGTGAAGAAAGGCCTTCTTTGCCAGCTTTTTGGTGGAAATGCTTTGAAGTTGGCATCTGGTGCTAACTTTCGTGGTGATCTTAATATTTTACTAGTCGGTGATCCTGGAACCAGCAAGTCCCAGCTGCTCCAGTACATACGTAAACTTTCTCCACGTGGCATTTACACAAGTGGAAGGGGGAGCTCTGCTGTTGGACTGACTGCTTATGTGACCAAAGATCCTGAAACAGGCGAAACTGTTCTCGAGAGTGGCGCTCTAGTTTTAAGTGACAGAGGCATCTGCTGTATAGATGAATTTGACAAAATGTCTGAGAATGCCAGGAGCATGTTACATGAGGTGATGGAACAACAAACTGTTTCAATAGCAAAAGCAGGTATTATCGCCTCCCTCAATGCCAGGACTTCAGTGTTGGCTTGTGCGAATCCCAGTGGATCACGATATAACCCTCGTTTGTCTGTCATTGACAACATACAACTTCCTCCTACACTTCTGTCCCGGTTTGATTTGATCTACTTAATTCTTGACAAGGCTGATGAACAAACAGATAGACGGCTTGCCAAGCATATTAGCTTAGAGCAAGATGTGTTGGATCTTCCTACGTTAACTGCTTATGTGAGCTATGCTCGAAAGCATATACACCCACAACTATCTGATGAAGCTGCTGAAGAATTGACTAGAGGTTACGTTGAGATAAGAAGGAGAGGAAATTTTCCAGGGAGTAGCAAAAAGGTGATAACAGCAACACCAAGGCAGATTGAGAGTCTAATACGGCTTAGCGAAGCCTTGGCTCGGATTCGCTTCTCAGAATGGGTGGAGAAGCGGGATGTAATGGAGGCATTTCGGCTTCTAGAAGTTGCAATGCAGCAGTCTGCCACAGATCACTCTACTGGAACCATTGACATGGATCTTATTACCACTGGAGTTTCTGCAAGTGAAAGGATGAGGCGAGAAAGTCTGGTACAAGCAACTCGCAACATAATCATGGAGAAGATGCAAATTGGGGGACCATCATTGCGATTATTGGAGTTACTGGAAGAGTTGAAGAAACAGAACGCCAGTGAACTCCACCTCAGTGATCTAAGAAATGCAGTTGCAACTTTGGCCAGCGAAGGATTTGTTGCTCTGCATGGTGACAGTATAACAAGATCGTGA 2208 0.4434 MSTPVAATPTSTDDAPMSSEGGEGYNADDIRPTFVWGTNISVEDVHEATQRFLKHFREKSSQSDGLHMEGKYETAIKQVIEIEGESLDVDAHEVFDYDPDLYTKMVRYPLEVLAIFDLVLMNMVSRINPLFEKHIQTRIFNLKTSTSMRNLNPSDIERMVSLKGMIIRCSSIIPEIKEAIFRCLVCGYCSETVAVERGRIAEPTKCVREECQARNSMTLVHNRCSFTDKQIVRLQETPDEIPEGGTPHTVTLLMHDKLVDAGKPGDRVEVTGIYRAMSVRTYIDCLYIKKTDKSRMMSEDAMDVETSLGNRNTKEIHFDEEKVAQLKELSKQPDVYERLTKSLAPNIWELDDVKKGLLCQLFGGNALKLASGANFRGDLNILLVGDPGTSKSQLLQYIRKLSPRGIYTSGRGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSENARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIQLPPTLLSRFDLIYLILDKADEQTDRRLAKHISLEQDVLDLPTLTAYVSYARKHIHPQLSDEAAEELTRGYVEIRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRFSEWVEKRDVMEAFRLLEVAMQQSATDHSTGTIDMDLITTGVSASERMRRESLVQATRNIIMEKMQIGGPSLRLLELLEELKKQNASELHLSDLRNAVATLASEGFVALHGDSITRS 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele33g0102 735 Pfam MCM AAA-lid domain 552 638 IPR041562 -
Lele33g0102 735 Pfam MCM OB domain 148 277 IPR033762 -
Lele33g0102 735 Pfam MCM N-terminal domain 47 144 IPR027925 -
Lele33g0102 735 Pfam MCM P-loop domain 323 541 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lele33g0102 735 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 221 233 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Lele33g0102 735 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 497 514 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Lele33g0102 735 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 170 183 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Lele33g0102 735 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 351 362 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Lele33g0102 735 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 640 649 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Lele33g0102 735 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 346 652 IPR027417 -
Lele33g0102 735 FunFam DNA helicase 175 227 - -
Lele33g0102 735 Gene3D - 39 142 - -
Lele33g0102 735 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 47 696 IPR031327 GO:0003677|GO:0005524|GO:0032508
Lele33g0102 735 SUPERFAMILY Nucleic acid-binding proteins 67 280 IPR012340 -
Lele33g0102 735 Gene3D - 313 644 IPR027417 -
Lele33g0102 735 CDD MCM4 338 638 - -
Lele33g0102 735 Gene3D - 175 227 - -
Lele33g0102 735 Gene3D - 645 726 IPR036388 -
Lele33g0102 735 MobiDBLite consensus disorder prediction 1 17 - -
Lele33g0102 735 ProSiteProfiles MCM family domain profile. 335 541 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lele33g0102 735 Gene3D - 148 280 IPR012340 -
Lele33g0102 735 ProSitePatterns MCM family signature. 444 452 IPR018525 GO:0003677|GO:0005524|GO:0006260
Lele33g0102 735 PRINTS Mini-chromosome maintenance (MCM) protein family signature 436 450 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lele33g0102 735 PRINTS Mini-chromosome maintenance (MCM) protein family signature 488 500 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lele33g0102 735 PRINTS Mini-chromosome maintenance (MCM) protein family signature 376 391 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lele33g0102 735 PRINTS Mini-chromosome maintenance (MCM) protein family signature 464 477 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lele33g0102 735 PRINTS Mini-chromosome maintenance (MCM) protein family signature 515 523 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lele33g0102 735 FunFam DNA helicase 316 645 - -
Lele33g0102 735 SMART mcm 144 640 IPR031327 GO:0003677|GO:0005524|GO:0032508
Lele33g0102 735 MobiDBLite consensus disorder prediction 1 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele33g0102 Lele-ChrLele33 650715 656047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele33g0102 8 734 Core DNA Replication Machinery Family AT2G16440 75.798 0.0 1158