Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele33g0101 ATGTTTCGGTGCGTACAAGTGCGATCAGATGATGATTGGGTGAGTGAATTTGCGTACCATACGTCGGTGACGGTTGGAGGGCATGTCTTTTGTGGTCTTCTGTATGATCAAGGCCCTTATCATGGGGCCGTTGCTGAGAGCTCTTCCTCAGTCCCTCTTCTTCAGCATAACGATCTAATCAACGTAGCAACACAGACGACCCATAATATTGAGGCTGCAACAATGGCATCTTCTTCTGCTCGTGATTCTATCTTTCATTATCCTTTTCCCCTACCTGCTATGCCCTATTTCTCCAACCCCCAACCTTAA 309 0.4693 MFRCVQVRSDDDWVSEFAYHTSVTVGGHVFCGLLYDQGPYHGAVAESSSSVPLLQHNDLINVATQTTHNIEAATMASSSARDSIFHYPFPLPAMPYFSNPQP 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele33g0101 102 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 80 IPR007818 GO:0003700|GO:0006355
Lele33g0101 102 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 1 39 IPR006511 -
Lele33g0101 102 Pfam Domain of unknown function (DUF702) 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele33g0101 Lele-ChrLele33 646585 646893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele33g0101 1 63 C2H2 Transcription Factor Family AT5G66350 52.381 5.48e-13 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Lele33g0101 DUF702 5.2e-12 No_clan