Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele33g0087 ATGCGAACACTTTGTGGTGTCTGTGAGAGCGCTGCAGCGATCATCTTCTGTGCTGCAGACGAGGCTGCTTTATGCCGTGCATGCGACGAAAAGGTCCATACATGCAACATGCTTGCTAGTAAACATGTACGAGTTGGGATGGCTGACCCCACTGATGTTCCCCGCTGTGATATTTGCGAAAATGATCCTGCTTTCTTTTACTGTGAGATAGATGGTAGTTCGTTGTGTCTGCAATGTGACATGATAGTACATGTTGGTGGTAAAAGAACCCATGAAAGATATCTTCTATTGAGGCAAAGAGTTGAGTTTCCAGGTGACAAACCTGGTCGATTGGAAGAACTAGGGCTGCAACCCCTTGATCAAAATGAATTAAAGAAGGACCAAAGTCATACCCTTAAGCTAATAACAAGAGATGGCCTGCATAACCATAGGGTCTCACCTGCTACAATTCTAGAAAATAATGTTGGTGATCATGGAAAGATGGATAAAAAACTAATTGATCTTAATACTAGACCACAACGGTTAAATGGACCAACATCAGACAATCAGGAACTTGAACAGGAACCGGCCATGGATATTTCAAGTGGCAATAACAATGAATCTGTGGTTCCAGGAGAATCCTTCAAACGTGAGGCTGAGAAGAAATAA 648 0.4275 MRTLCGVCESAAAIIFCAADEAALCRACDEKVHTCNMLASKHVRVGMADPTDVPRCDICENDPAFFYCEIDGSSLCLQCDMIVHVGGKRTHERYLLLRQRVEFPGDKPGRLEELGLQPLDQNELKKDQSHTLKLITRDGLHNHRVSPATILENNVGDHGKMDKKLIDLNTRPQRLNGPTSDNQELEQEPAMDISSGNNNESVVPGESFKREAEKK 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele33g0087 215 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lele33g0087 215 Pfam B-box zinc finger 3 43 IPR000315 GO:0008270
Lele33g0087 215 Pfam B-box zinc finger 53 92 IPR000315 GO:0008270
Lele33g0087 215 MobiDBLite consensus disorder prediction 172 204 - -
Lele33g0087 215 CDD Bbox1_BBX-like 4 45 - -
Lele33g0087 215 SMART bboxneu5 51 96 IPR000315 GO:0008270
Lele33g0087 215 SMART bboxneu5 1 47 IPR000315 GO:0008270
Lele33g0087 215 CDD Bbox1_BBX-like 56 96 - -
Lele33g0087 215 MobiDBLite consensus disorder prediction 167 215 - -
Lele33g0087 215 FunFam B-box zinc finger protein 19 2 92 - -
Lele33g0087 215 Gene3D Classic Zinc Finger 2 95 - -
Lele33g0087 215 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Lele33g0087 215 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele33g0087 Lele-ChrLele33 534660 536621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele33g0087 1 214 C2C2-CO-like Transcription Factor Family AT4G38960 57.870 6.89e-79 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Lele33g0087 zf-B_box 5.9e-06 No_clan