Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele33g0052 ATGGCCACTGCTGCTTCCTTTTACGAGGTGTTGGGTATTTCAGTGGGGGCGAGCTGCCAAGAAATAAAGAGTGCCTACAGAAAGCTCGCAAGAACATGTCACCCTGATGTGGTGACCATGAATCACAAGGTCGAATCGGCCAAGGAGTTTCTGAAGATCCACGCTGCCTATTCAACGTTGTCAGACCCTGATAAGCGTGCTCTATATGCCAGACAACTTTGCAAGTACAAAACATCTCTGCCCTGCCCAAATATGAACTCCATGTCAGGTCATCATCAAAGATTTGGCCAAGCTGGACATAAATGGGAGACGGATCAGTGTTGTACCGCCTCTTTGCCATTGTGGTCCAAGAGCCAAAACCAGAGAAACAAGATCCGAGCGGAGATGGGTGAGAGGGTGACTGGGAAGGTGAAGTGGTTCAGTGACCAGAAGGGTTTTGGCTTCATAACTCCTGACGATGGCGGCGAGGACCTCTTCGTCCACCAATCTGCGATCCGGACGGATGGGTTTCGCAGTCTCGGCGATGGAGAGTCTGTCGAGTTCCTGATCGAGTCCGACCCTGATGGCCGTACCAAGGCCGTCGACGTCACCGGCCCCTCTGGGGCCGATGTTCAGGGGAGCCGACGTGGTGGAGGTGGTGCTGGAGGGAACAGATCCTACGGTGGGGGCCGAGGCGGTGGTTACGGAGGTGGCTACGGTGCTGGCGGCGGTTATGGTGGCAGTCGTGGTGGAAGAGGTGGAGGTGGTGGTGGTTATGGCGGCGGCGGCGGCGGCGGTTGTTATAACTGCGGTGAGGTTGGTCACCTGGCCAGGGACTGCTACCAGGGTGGTGGCGGCGGAGGAGGAGGTAGGTACGGCGGCGCAGGCGGCGGTGGAAGTGGAGGGTGTTACACCTGCGGGGAGTCTGGGCATTTTGCCAGGGACTGCCCAACCGGCGCTCGCTGA 945 0.5788 MATAASFYEVLGISVGASCQEIKSAYRKLARTCHPDVVTMNHKVESAKEFLKIHAAYSTLSDPDKRALYARQLCKYKTSLPCPNMNSMSGHHQRFGQAGHKWETDQCCTASLPLWSKSQNQRNKIRAEMGERVTGKVKWFSDQKGFGFITPDDGGEDLFVHQSAIRTDGFRSLGDGESVEFLIESDPDGRTKAVDVTGPSGADVQGSRRGGGGAGGNRSYGGGRGGGYGGGYGAGGGYGGSRGGRGGGGGGYGGGGGGGCYNCGEVGHLARDCYQGGGGGGGGRYGGAGGGGSGGCYTCGESGHFARDCPTGAR 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele33g0052 314 Pfam Zinc knuckle 295 310 IPR001878 GO:0003676|GO:0008270
Lele33g0052 314 Pfam Zinc knuckle 259 273 IPR001878 GO:0003676|GO:0008270
Lele33g0052 314 CDD DnaJ 7 62 IPR001623 -
Lele33g0052 314 Gene3D DnaJ domain 1 89 IPR036869 -
Lele33g0052 314 Pfam 'Cold-shock' DNA-binding domain 134 198 IPR002059 GO:0003676
Lele33g0052 314 ProSiteProfiles Cold-shock (CSD) domain profile. 132 198 IPR002059 GO:0003676
Lele33g0052 314 SUPERFAMILY Chaperone J-domain 4 76 IPR036869 -
Lele33g0052 314 SMART c2hcfinal6 259 275 IPR001878 GO:0003676|GO:0008270
Lele33g0052 314 SMART c2hcfinal6 295 311 IPR001878 GO:0003676|GO:0008270
Lele33g0052 314 MobiDBLite consensus disorder prediction 190 220 - -
Lele33g0052 314 Gene3D - 291 314 - -
Lele33g0052 314 Gene3D - 256 282 - -
Lele33g0052 314 ProSiteProfiles Zinc finger CCHC-type profile. 260 273 IPR001878 GO:0003676|GO:0008270
Lele33g0052 314 Gene3D - 126 210 IPR012340 -
Lele33g0052 314 PANTHER COLD SHOCK DOMAIN PROTEIN 2 130 311 - -
Lele33g0052 314 SMART csp_8 134 199 IPR011129 GO:0003676
Lele33g0052 314 PRINTS DnaJ domain signature 45 65 IPR001623 -
Lele33g0052 314 PRINTS DnaJ domain signature 8 26 IPR001623 -
Lele33g0052 314 PRINTS DnaJ domain signature 26 41 IPR001623 -
Lele33g0052 314 ProSitePatterns Cold-shock (CSD) domain signature. 146 165 IPR019844 -
Lele33g0052 314 SUPERFAMILY Nucleic acid-binding proteins 129 198 IPR012340 -
Lele33g0052 314 ProSiteProfiles dnaJ domain profile. 6 73 IPR001623 -
Lele33g0052 314 PRINTS Cold shock protein signature 171 189 IPR002059 GO:0003676
Lele33g0052 314 PRINTS Cold shock protein signature 156 165 IPR002059 GO:0003676
Lele33g0052 314 PRINTS Cold shock protein signature 135 150 IPR002059 GO:0003676
Lele33g0052 314 SUPERFAMILY Retrovirus zinc finger-like domains 253 312 IPR036875 GO:0003676|GO:0008270
Lele33g0052 314 CDD CSP_CDS 133 198 IPR002059 GO:0003676
Lele33g0052 314 ProSiteProfiles Zinc finger CCHC-type profile. 296 310 IPR001878 GO:0003676|GO:0008270
Lele33g0052 314 SMART dnaj_3 5 65 IPR001623 -
Lele33g0052 314 Pfam DnaJ domain 7 69 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele33g0052 Lele-ChrLele33 361774 364014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele33g0052 8 69 C2H2 Transcription Factor Family AT1G74250 44.615 3.95e-09 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Lele33g0052 CSD 2.8e-25 CL0021