Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele33g0034 ATGGAGTTTGATGAATATGAGTACTTAGAGAAGACGGTTGAAAATTCTGAACTTCAGAGGAAGGAGAAAACTAATGGTAGTGACCTAACTGTAAAAGCTGAAGAGAGAGATCGTACTCGGAGTTCAAAGCAAGAAATTAAAGCTAGTGAGAAGCGTGATGATGTTGATCGTCATTCCAAGAAATTAAAATCTGGAGATGATTCTCATGGTTATGACAGTCACAAAGAAAGAGGGTCATCTCGCCATCGTTCACCTTCTAGAGATGGAGACAAGGAGAAAGATCGGCATAGAAGCATCCATGACAATAGGGGTAGGGTGAGGGATCAAGATAGAGACAAGAGAGACCAACACCGAGAACATGACCGTGAACGAGAAAGAGACAAAAGAGACCGGGGGAGTGAGAGTAAAAGAGAAAGGGAGAGGGACCACTCACGGCGAAGCAGAAGTTTATCTGAAAGGTGTCAGAGTGATTTGGATGAAAGAGATAGAGAGAGGAGTCATGACAGAGACTATAGAGATAGAGAAAGAAGCCGGGACAAGGATTACAGAGACAGAGAAAGGGAGAGAGAATCAAGCGAGCGGGATCGAGATAACAGACGACATAAAGAAAAAAAGGAAGAAGCAGCAGAACCTGAGGCTGACCCTGAACGGGATCAGAGGACTGTGTTTGCTTATCAGATTTCTCTGAAGGCAGATGAAAGAGATATATATGAGTTCTTCTCTAGGGCTGGCAAGGTACGAGATGTTCGCCTGATAATGGACCGCAATACCCGTCGATCTAAGGGTTTTGGGTATATAGAGTTCTATGACGTCATGTCTGTCCCCATGGCAATAGCACTTTCTGGACAACCACTTCTTGGCCAACCAGTGATGGTGAAACCATCAGAAGCAGAAAAGAATTTGGTTCAGTCTACTACTTCTGTATCTAGTGGATCCACTGGACTTATGGGCCCTTATTCTGGGGGAGCAAGAAGGCTCTATGTTGGCAATTTGCATTTCAGTATTACTGAAGCTGATCTTCGTGGGGTTTTTGAAGCATTCGGTCAGGTTGAGCTAGTCCAGCTGCCTCATGATGAAACTGGGCACTGCAAAGGTTTTGGCTTTGTGCAGTTTGCATGCCTTGAAGATGCAAGAAATGCCCAGAGCTTAAATGGACAACTTGAAATTGGTGGCAGAACAATAAAGGTATCTGCAGTTATTGATCAACCCGGAATGCAAGAAGTTGGAGGAAATACTGGTGATTTTGATGATGATGATGATGGCGGGGGCGGCTTGTCCCTCAACGCATGTTCTCGGGCATTACTCATGCAGAAATTGGATCGTAGTGGCACTGGATCAGGTATTACTGGTTCCCTAGGTAATTCTATTGCCAACAACACAAGCCTTAACCTACCAGCTACAGCACACGTGGGAGCTCCATCTGTGGGTTCTCTAGCGGTTTCTCCAATTCCCCCAGTTCCTTCAGCAGCTGGGTTGCCCGGTGGAAGTCTACAAATTCCCACTGCTACTGCTACATTTCCTATTATTGATACAATTGGTGCTCCAAGTGAATGCTTATTGTTAAAGAATATGTTTGATCCCAAAGATGAGAAGGAACCAGATTTTGATTTGGATATTAAAGAAGATGTTGAAGCAGAATGCTCTAAGTTTGGAAATTTAAAACATGTATATGTCGACAAGAACACTGCTGGCTTTGTCTACTTACGATTTGATAATACTCAAGCTGCTATAAATGCACAGCGATCTCTGCATGGGAGGTGGTTTGCAGGGAAGATGATCACTGCTAGCTTCATGGTGCCTCAGGTATATGAGGATAAATTCCAAGACGGCAGATTGGATAATTAA 1845 0.4401 MEFDEYEYLEKTVENSELQRKEKTNGSDLTVKAEERDRTRSSKQEIKASEKRDDVDRHSKKLKSGDDSHGYDSHKERGSSRHRSPSRDGDKEKDRHRSIHDNRGRVRDQDRDKRDQHREHDRERERDKRDRGSESKRERERDHSRRSRSLSERCQSDLDERDRERSHDRDYRDRERSRDKDYRDRERERESSERDRDNRRHKEKKEEAAEPEADPERDQRTVFAYQISLKADERDIYEFFSRAGKVRDVRLIMDRNTRRSKGFGYIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTSVSSGSTGLMGPYSGGARRLYVGNLHFSITEADLRGVFEAFGQVELVQLPHDETGHCKGFGFVQFACLEDARNAQSLNGQLEIGGRTIKVSAVIDQPGMQEVGGNTGDFDDDDDGGGGLSLNACSRALLMQKLDRSGTGSGITGSLGNSIANNTSLNLPATAHVGAPSVGSLAVSPIPPVPSAAGLPGGSLQIPTATATFPIIDTIGAPSECLLLKNMFDPKDEKEPDFDLDIKEDVEAECSKFGNLKHVYVDKNTAGFVYLRFDNTQAAINAQRSLHGRWFAGKMITASFMVPQVYEDKFQDGRLDN 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele33g0034 614 Gene3D - 319 428 IPR012677 -
Lele33g0034 614 Gene3D - 513 612 IPR012677 -
Lele33g0034 614 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 541 593 IPR000504 GO:0003723
Lele33g0034 614 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 326 395 IPR000504 GO:0003723
Lele33g0034 614 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 289 IPR000504 GO:0003723
Lele33g0034 614 CDD RRM1_RBM39_like 221 293 - -
Lele33g0034 614 SUPERFAMILY RNA-binding domain, RBD 324 600 IPR035979 GO:0003676
Lele33g0034 614 MobiDBLite consensus disorder prediction 16 219 - -
Lele33g0034 614 FunFam CC1-like, splicing factor 319 429 - -
Lele33g0034 614 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 517 600 IPR000504 GO:0003723
Lele33g0034 614 TIGRFAM SF-CC1: splicing factor, CC1-like family 102 609 IPR006509 GO:0003723|GO:0005634|GO:0006397
Lele33g0034 614 FunFam Splicing factor, CC1-like protein 512 611 - -
Lele33g0034 614 FunFam RNA-binding protein 39 isoform X1 213 305 - -
Lele33g0034 614 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 608 - -
Lele33g0034 614 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 417 535 IPR029123 -
Lele33g0034 614 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 220 297 IPR000504 GO:0003723
Lele33g0034 614 SMART rrm1_1 221 293 IPR000504 GO:0003723
Lele33g0034 614 SMART rrm1_1 518 596 IPR000504 GO:0003723
Lele33g0034 614 SMART rrm1_1 325 397 IPR000504 GO:0003723
Lele33g0034 614 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 324 401 IPR000504 GO:0003723
Lele33g0034 614 SUPERFAMILY RNA-binding domain, RBD 213 322 IPR035979 GO:0003676
Lele33g0034 614 CDD RRM3_RBM39_like 516 598 - -
Lele33g0034 614 Gene3D - 151 306 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele33g0034 Lele-ChrLele33 261006 268405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele33g0034 221 387 Eukaryotic Initiation Factors Gene Family AT4G34110 29.586 6.57e-14 72.8