Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele33g0020 ATGGATTCCCTCAAAAAATCATTCAAGTCCTATTATTCTTACAAACATCGCACGGACGCCGACTCCGGCCACGAGCAGCTTCCCATTCTCCTCGATCAAGAAACTCCCGACGATCATCATCGTCCTCCTCACCTCACTACTCCATCATCCATGTCCTCCACTACTCCCAGTCCACATCGCCCCGAAGTTGTCCTTAAAATCGACGAAGGCGACTCCAGAGGTCCCGCAGTGCAGCAGGGTGGCAAGATTTGGAGAGAAACTAGCTATGACTTCTGGAACAATGCAGACGTGAGCAAGAGTGCCAGTGATGGGAATGCTGGCGCTGGTACTAGTGGTAATGACGAGGATAGCTTCGATTTCCGGCATCGTGGGCAGGGTTCCGAGGATCCACCCTCCATGCTCATTGGTAAGTTCTTGCACAAACAGAAAGCTTCTGGTGACATGTCTCTCGATATGGATTTAGAAATGGAGGAGTTCCAGCATGACTACAAATTGCCTCCGGTGGAAGAGTCTCCGCAGCTCAATCGCATTTCCAAGGACCTCAAAGTCTCGTTTGAGGAACCCACTTCCAATGTTGTTGAGGTGGCAACTGATACCGTTAGACGAAGGTATAAGGACTCGCCGGGTCACACCGAAGTTCATAAATCGCCGCATCGCGATCAACTTGGATCGCCGGCTGTTGCTCAGAGCGGTAATGCTGCTGCCGGAGATGGCGAGGTGGTAAGATGTACCTCCAGCGCCACTTATGAAAGGAATCTTTCGTTGCAGAGGAAATCTGCTTTGCTGAAGGCCAGAAATAAGTCAAGATTGTTGGATCCGCCGGAGGAGCCGGACCGAAGGTCTGGTCGGGTGGCAAAATCAGGGCAAATGTTATCGGCGATGTTAGGGAAGAAAGGGGAGGACGAGGAAGACGACCCGTTTTTAGAGGAGGACGTACCCGACGAGTTGAAAAAGACCCATTTTAGCATATGGGTTCTGCTTGAGTGGTTGAGTTTGATTTTGTTTGTTGCTGCGCTAGCATGCACGCTGAGTATCCCAGTTTTGAGGAATAAGATTCTCTGGAAGCTCCAGTTATGGAAATGGGAGGTGATGATCCTGGTTCTGATTTGTGGTCGGTTGGTTTCTGATTGGGTAATTCGAATTTTGGTGTTCTTTATCGAAAGAAATTTCCTTTTGAGGAAGAGAGTCCTCTATTTCGTATATGGTGTGAGGAAGGCAGTTCAAAATTGTTTATGGTTGGGATTTGTTTTGATTGCTTGGCATCTATTATTCGATAAGAAGGTTGAGAGGGCGACTAGAGGCAACAACGCCCTTCAATATGTCACCAAGGTCTTGGTCTGCTTCTTGGTGGGTACTTTGGTATGGTTGGCAAAAACTCTCGTGGTTAAGGTTATGGCTTCTTCCTTCTATACAACAACATACTTTGATAGGATTCAGGAGTCACTGTTTAATCAATTTGTGATTGAAACACTGTCGGGGCCACCTCTGATCGAAATTCAGAAGTCAGAGGAAGAGGAACAAAAACTTGCTGATGAGGTTCAGAAACTGCAGAATGCTGGGGTTAACATTCCCCCTGAGCTCAGGGCAACTGCCTTCTCTAGAACTAAGAGTCCAAGGGCGACGAAAAGTGGAATGCTCCAGAAAAGTCCCCGTCTTATAAGTGGAAAGTTTTCTCGTCCACTCTCCCATAAGTCAGATGATGGAATTACTATTGATCACCTACATAAGCTGAATCCGAAAAATGTCTCTGCGTGGAATATGAAAAGGTTGATGAATATGGTCCGACACGGCACTCTTTCTACACTGGATGAACAGATACTTGATTCAGCTCAAGATGATGAAAATGGCACACAGATTAGAAGTGAAAATGAGGCAAAAGCTGCGGCAAAGAAAATATTTCAGAATGTTGCCAGGCGGGGTAGCAGGTTCATTTACCTGGAGGATTTGATGGGTTTTATGCGGGAAGATGAAGCTGAGAAGACCATGGATCTCTTTGAAGGAGCATCTGATTCCGGGAAGATCAGCAAGTCTGCCTTGAAGAACTGGGTGGTTAATGCCTTCAGAGAGAGGAGAGCACTTGCTTTGACCTTGACTGATACCAAAACCGCAGTGAACAAACTTCATCGAATACTCAATTTTATAGTTGGCATCATTATACTAGTTATCTGGCTATTAATAATGGAAATTGCCACTACCAAATTTCTTCTCTTTGTGAGCTCACAGCTTGTCTTGGTTGCGTTTATATTTGGAAATACCTGCAAGACGGTATTTGAAGCAATTGTTTTCTTATTTATCATGCACCCATTTGACGTGGGAGATAGGTGTGAAATCGATGGGGTCCAGATGGTTGTGGAAGAAATGAATATACTTGCAACCATATTTTTAAGATATGACAATCAAAAAATAATCATCCCCAACAGCGTCCTTGCAACTAAGGCCATACATAATTACTACCGGAGTCCTGACATGGGAGATGCTATTGATTTCTTCATACATGTGTCTACCCCAGCTGAAAAGGTTGCACTCATGAAACAAAGAATACATAGCTTCATCGATAACAAGAAGGAGCACTGGTATCCTTCAGCTTTTATAGTCTTCAGGGATCTGGAACAATTAAACATGATAAGGATATCGATTTGGCCAACTCATAGGATGAACCACCAAGACATGGGAGAAAGGTTTGTCAGAAGATCCCTTCTGATTGACGAGCTGCTCAAGATATTCCGGGAGCTTGACATCCAGTATCGTCTTCTTCCTCTCGATATTAACATTAGAAGCATGCCTACCACTTCCGAACGGCTTCCACCTAGTTGGGCCACAATCACGAGTTAA 2832 0.4523 MDSLKKSFKSYYSYKHRTDADSGHEQLPILLDQETPDDHHRPPHLTTPSSMSSTTPSPHRPEVVLKIDEGDSRGPAVQQGGKIWRETSYDFWNNADVSKSASDGNAGAGTSGNDEDSFDFRHRGQGSEDPPSMLIGKFLHKQKASGDMSLDMDLEMEEFQHDYKLPPVEESPQLNRISKDLKVSFEEPTSNVVEVATDTVRRRYKDSPGHTEVHKSPHRDQLGSPAVAQSGNAAAGDGEVVRCTSSATYERNLSLQRKSALLKARNKSRLLDPPEEPDRRSGRVAKSGQMLSAMLGKKGEDEEDDPFLEEDVPDELKKTHFSIWVLLEWLSLILFVAALACTLSIPVLRNKILWKLQLWKWEVMILVLICGRLVSDWVIRILVFFIERNFLLRKRVLYFVYGVRKAVQNCLWLGFVLIAWHLLFDKKVERATRGNNALQYVTKVLVCFLVGTLVWLAKTLVVKVMASSFYTTTYFDRIQESLFNQFVIETLSGPPLIEIQKSEEEEQKLADEVQKLQNAGVNIPPELRATAFSRTKSPRATKSGMLQKSPRLISGKFSRPLSHKSDDGITIDHLHKLNPKNVSAWNMKRLMNMVRHGTLSTLDEQILDSAQDDENGTQIRSENEAKAAAKKIFQNVARRGSRFIYLEDLMGFMREDEAEKTMDLFEGASDSGKISKSALKNWVVNAFRERRALALTLTDTKTAVNKLHRILNFIVGIIILVIWLLIMEIATTKFLLFVSSQLVLVAFIFGNTCKTVFEAIVFLFIMHPFDVGDRCEIDGVQMVVEEMNILATIFLRYDNQKIIIPNSVLATKAIHNYYRSPDMGDAIDFFIHVSTPAEKVALMKQRIHSFIDNKKEHWYPSAFIVFRDLEQLNMIRISIWPTHRMNHQDMGERFVRRSLLIDELLKIFRELDIQYRLLPLDINIRSMPTTSERLPPSWATITS 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele33g0020 943 MobiDBLite consensus disorder prediction 197 238 - -
Lele33g0020 943 PIRSF Memb_At2g17000 35 943 IPR016688 -
Lele33g0020 943 Gene3D - 768 817 IPR023408 -
Lele33g0020 943 MobiDBLite consensus disorder prediction 45 59 - -
Lele33g0020 943 MobiDBLite consensus disorder prediction 100 132 - -
Lele33g0020 943 FunFam Predicted mechanosensitive ion channel 768 817 - -
Lele33g0020 943 Pfam Mechanosensitive ion channel 709 913 IPR006685 GO:0016020|GO:0055085
Lele33g0020 943 MobiDBLite consensus disorder prediction 33 61 - -
Lele33g0020 943 MobiDBLite consensus disorder prediction 266 289 - -
Lele33g0020 943 Coils Coil 499 519 - -
Lele33g0020 943 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 38 938 IPR016688 -
Lele33g0020 943 MobiDBLite consensus disorder prediction 268 283 - -
Lele33g0020 943 MobiDBLite consensus disorder prediction 198 219 - -
Lele33g0020 943 SUPERFAMILY Sm-like ribonucleoproteins 758 817 IPR010920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele33g0020 Lele-ChrLele33 180584 184598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele33g0020 60 943 Mechanosensitive Ion Channel Family AT1G78610 57.802 0.0 961