LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele32g1357	ATGACCTGTTTTCCTGTATTATTTGGTAGAAGGTCGCATTCTTCAGTAAGGCTAGATCCAGACATCGAAGAAGAATTTTCCGGTCTTCACAATGTCAGACTTTATACGTACAAAGAACTACGAAATGCCACTGAAGATTTTAGTCCTATTAATAAGATTGGAGAGGGTGGTTTTGGTTCTGTTTACAAGGGACGGTTAAAAGGTGGAAAAGTTGCCGCTATTAAAGTCCTTTCAGCCGAATCAAGACAAGGGGTGAGGGAATTCTTGACAGAGATTAAGGTGATCTCAGAAATAGAGCATGAAAATTTAGTTAAGCTATATGGCTGCTGTGTGGAAGGGAATCACAGAATATTGATCTACAATTACCTCGAGAATAACAGCCTCGCACAAACCCTTATAGGTGGGCGACATAGCAGTATCCAATTCAATTGGAGAACACGGTCTAGAATATGCATTGGGGTCGCACGTGGGATTGCCTTTCTCCATGAGGAAGTAAGACCGCATATCGTTCATAGGGACATAAAAGCAAGTAACATTCTTCTTGACAAGGACCTCACACCCAAGATTTCAGATTTTGGGCTCGCTAAACTGATTCCAGCAAACATGACCCATGTTAGCACACGCGTTGCAGGAACCATAGGTTATCTGGCACCAGAGTATGCAATAGGAGGCAAGCTGACGCGAAAAGCTGATGTATACAGCTTTGGAGTCCTCCTTGTGGAGATTGTAAGTGGGAGATGTAACACAAACACACAATTACCTATTGAAGAACAGTACATTATAGAAAGGACATGGGATCTTTACCAGCGAAAGGAATTGGTAGCACTGGTAGATGAATCGCTGAATGGGGAGTTTGATGTTGAGGAAGCTTGCAGATATTTTAAGATTGGCCTTCTTTGCACGCAGGATGATCCCAAGGTGCGGCCGTCCATGTCATCGGTGGTGAAGATGCTCACCGGCAGAATTCGTGTTGACGAGAGAAACATAACAAAACCAGCCTTGATATCTGATTTTATGGACCTCAAAGTGAGGAAAAAACCAGTGAGTACTATTGACGTGGAGACTCAGGCTTCATCTTCATACCATTCATCCTCGGCCTCGTACAACCAAGATACTACCTTTTCGTCAACTGTTTCAACCGCTGCAACTGCAACCTTTACCGCACGATATGATCAAAGCATTTAG	1185	0.4329	MTCFPVLFGRRSHSSVRLDPDIEEEFSGLHNVRLYTYKELRNATEDFSPINKIGEGGFGSVYKGRLKGGKVAAIKVLSAESRQGVREFLTEIKVISEIEHENLVKLYGCCVEGNHRILIYNYLENNSLAQTLIGGRHSSIQFNWRTRSRICIGVARGIAFLHEEVRPHIVHRDIKASNILLDKDLTPKISDFGLAKLIPANMTHVSTRVAGTIGYLAPEYAIGGKLTRKADVYSFGVLLVEIVSGRCNTNTQLPIEEQYIIERTWDLYQRKELVALVDESLNGEFDVEEACRYFKIGLLCTQDDPKVRPSMSSVVKMLTGRIRVDERNITKPALISDFMDLKVRKKPVSTIDVETQASSSYHSSSASYNQDTTFSSTVSTAATATFTARYDQSI	394

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele32g1357	394	CDD	STKc_IRAK	53	320	-	-
	Lele32g1357	394	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	31	360	-	-
	Lele32g1357	394	SUPERFAMILY	Protein kinase-like (PK-like)	26	318	IPR011009	-
	Lele32g1357	394	ProSitePatterns	Protein kinases ATP-binding region signature.	53	75	IPR017441	GO:0005524
	Lele32g1357	394	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	169	181	IPR008271	GO:0004672\|GO:0006468
	Lele32g1357	394	Gene3D	Phosphorylase Kinase; domain 1	19	122	-	-
	Lele32g1357	394	Pfam	Protein kinase domain	49	316	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele32g1357	394	FunFam	cold-responsive protein kinase 1	18	122	-	-
	Lele32g1357	394	ProSiteProfiles	Protein kinase domain profile.	47	334	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele32g1357	394	FunFam	cold-responsive protein kinase 1	123	334	-	-
	Lele32g1357	394	SMART	serkin_6	47	318	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele32g1357	394	Gene3D	Transferase(Phosphotransferase) domain 1	123	332	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele32g1357	Lele-ChrLele32	14522482	14524659	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele32g1357	21	359	Receptor kinase-like Gene Family	AT1G53430	51.471	4.37e-111	346

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Lele32g1357		Pkinase	1.4e-47	CL0016