Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g1323 ATGGACAAGAGAAAGCATAAATCTAGGAAGGAAGATTATGAAGGGAAGGAAGAGGATTCCAAGAGGAGTCGCCATGAACGAGACCGTGAGAAGACTAGTGATAAAGGTAAGGATAGAAGTGAAGGGAGGCATAGGAATAGAGAGAAGAGGGATCGTGAGAGCCGACTCTATGAGAGAGAGAAAAGCAGTGATTCTGATGAAAGACTTGATAGAGAAAGAGAGAAGCATAGAGATAAGGATAAGGATAAGGATAAGGATAGGACCCGAGTTCATGATGAAGAAAGAGAAAGAACTCGAGACAAGAAAAGGGAAAGGGACAGGGAAGATAGGGAAAGGGAGAGGAGAGATAGGAGGGAGAAAGAAAGGGAGAAGGATAGAGAAAGGGAACGGGATAGGAGAGAGCGTGAAAGGGAGAGGGAATTTGAAAAAGAAAGGGGCAGGAGAGGAAGAGAGAGGGTGAAGCATAGGGAAGTTGATAGTGAGTACAGTGATGATGATTCCAAGGATAGAGAAAGAAAGCGGCACAATAAAGATGATGATGATTACAAGGGTAGAGAGCAGGAGAAGAGTGTCAGCAAGTCAAGTAGGCAAACTGAGAATAATGAAGAGAGCCCAAGGAAAAAGAGTGACAATGACAACTCAGATGCCAATGAAAGCAAACCAAGCCGTGAGGAGGAGCTAGAGGATGAACATAGGAGGTTGGATGAAGAGATGGAAAAGAGGAGAAGGAGAGTTCAGGAATGGCAAGAGCTGAGGAGGAAGAGAGAAGAAGCTGAGAAAGAAAAGCATGGTGAAGCAAGTGCTGATGTACCCAAGTTTGGAAAGGCCTGGACACTTGAAGGGGAATCTGATGATGAAGAAGGAACCGCTACAGGGAAGCCAAATGCAGCTATGGATGTAGATGAAGATGACAAACCTTTGGATAAAGAACCTAAGGATTCGATGGCAGTAGATGCTAATAATGGACCTGTTACATCTAATTTACTGGATGAAGCTGATGGAACTCAGGCAGACGAGGAAATTGATCCATTGGACGCTTTCATGAATTCTATGGTTTTGCCTGAAGTTGAGAAGCTGAATAGTGCTGTGGCTCCTGAATCTTCTAATCAAACTGCTGGCTTAACGCCCAAGGGTAACAAGGACGAGCACAGTAATGGTGGGAACCTTGGGAGAGGTTCTAATAAATCAATTGGGAGAATAATTCCTGGTGAAGAGTCTGACTCAGATTATGAAGACCTTGAAATTGAGGGTGATCCCTTAGATGAAGATGATGATGAATTCATGAAAAGAGTAAAGAAGACCAAAGCTGAAAGACTTGCTATTGTTGACCACTCAAAGATTGATTATGAGCCATTCAAGAAAAATTTTTATATTGAAGTAAAGGAGATTGCCAAGTTGACTCCTCAAGAAGTTGCAGCATACAGGAAGGATTTGGAGTTGAAGATACATGGAAAGGATGTGCCAAAGCCTGTGAAATCATGGAATCAGATTGGTCTTACTAGCAAAATTTTGGAGACAATAAAGAAGCTTAATTATGAAAAGCCAATGACTATTCAAGCTCAGGCCCTCCCTGTGATTATGAGTGGTAGAGATTGCATAGGAATTGCAAAAACTGGGTCAGGAAAAACCCTTGCTTTTGTTCTGCCAATGTTGAGGCACATCAAGGATCAGCCACCAGTTGTTGCAGGAGATGGGCCAATTGGGCTTATAATGGCCCCTACAAGGGAGCTTGTTCAACAGATTCACAGTGATATAAAGAAATTTGCTAAAGTGCTTGGTCTCAGGTGTGTGCCTGTCTATGGAGGTTCTGGTGTTGCCCAGCAAATCAGTGAATTGAAACGTGGTACTGAGATAGTGGTTTGTACTCCAGGTAGGATGATTGACATACTATGCACCAGTGGTGGAAAGATAACTAACCTGCGTAGAGTCACTTATCTGGTCATGGACGAGGCTGATCGTATGTTTGACATGGGCTTTGAACCTCAAATCACTCGAATTGTTCAGAATATTCAGCCAGATCGTCAAACTGTTCTCTTTTCTGCTACTTTCCCCCGCCAGGTTGAAATTCTGGCTCGGAAGGTTTTGAACAAGCCTGTTGAAATACAAGTTGGTGGAAGGAGTGTTGTTAACAAGGACATAACACAGCTAGTAGAGGTGAGGCCAGAAAATGAGAGGTTCTTCAGGCTCTTGGAATTACTTGGGGAATGGTATGAGAAGGGAAAGATTTTGATATTTGTCCACTCGCAGGAGAAATGTGATGCTTTGTTCAAGGATTTGCTTAGACATGGTTATCCATGCCTTTCTCTTCATGGGGCTAAGGATCAGACAGATCGAGAATCTACAATTTCAGACTTCAAAAGCAATGTCTGCAATTTGTTGATTGCAACTAGTATTGCTGCCAGGGGTTTGGATGTCAGGGAGCTAGAATTGGTTATCAATTTTGATGTTCCAAATCACTATGAAGATTATGTACATCGTGTTGGACGTACAGGACGAGCTGGTCGGAAGGGTTGTGCTATCACATTTATTTCGGAGGAAGAAGCAAGATATGGACCAGATCTGGTCAAAGCTTTGGAGCTATCTGAACAAATAGTTCCTGATGACCTGAAAGCTCTTGCCGATGGGTTTATGGCAAAAGTTAATCAAGGACTTGAGCAAGCCCATGGGACTGGTTATGGAGGCAGTGGTTTTAAATTTAATGAAGAAGAAGATGAGGTGAGGAGAGCAGCCAAGAAAGCACAAGCCAGAGAATATGGGTTTGAAGAAGATAAATCTGATTCTGAGGATGAAGATGAAGGTATTCGGAAGGCAGGAGGTGACATCTCACAGCATCCTGCTCTTGCACAGATTCTAGTTGCTGCCACCAAAGCAAACACCCCTGCAATGCCCTCTACTTCCCAGGTAATTTCAAATGGTGGATTGCCTGTTTCTTTGCCTGCTGTTCTTGGTCTCCAGACTGCAGGAGTCATGCCTGGGACAGGGCTGCCCGTTGTTCCAAGTGATGGAGCAACTCGGGCGGCATTAGCTGCTATGAACCTGCAAAATAAATTAGCAAAGATTGCTGGTGCAATGCCTGAGCATTATGAAGCTGAGTTGGAGATAAATGATTTCCCCCAAAATGCTCGGTGGAAAGTCACACACAAGGAAACTCTAGGCCCAGTTTCTGAGTGGACTGGAGCTGCTATTACCACCAGGGGGCAGTATTTCCCACCTGGCAAGGTCCCAGGATCTGGTGAACGGAAACTCTACTTGCAAATACTCTGTTGTATAATAGGGGATCTTTTTAGCCTTTTTTGCATGTCCCATAGACTCCCTCCATTACACTTGCCACTAGATTTTCCAAGAGGAGAGGTGGTGGTGATCATGGTGCAGCATTTTTGCATTGAAGTCCAGTTTAATAGACAAATACTCTGTTGTATAATAGCTCAGGGGATATCATAA 3441 0.4371 MDKRKHKSRKEDYEGKEEDSKRSRHERDREKTSDKGKDRSEGRHRNREKRDRESRLYEREKSSDSDERLDREREKHRDKDKDKDKDRTRVHDEERERTRDKKRERDREDRERERRDRREKEREKDRERERDRREREREREFEKERGRRGRERVKHREVDSEYSDDDSKDRERKRHNKDDDDYKGREQEKSVSKSSRQTENNEESPRKKSDNDNSDANESKPSREEELEDEHRRLDEEMEKRRRRVQEWQELRRKREEAEKEKHGEASADVPKFGKAWTLEGESDDEEGTATGKPNAAMDVDEDDKPLDKEPKDSMAVDANNGPVTSNLLDEADGTQADEEIDPLDAFMNSMVLPEVEKLNSAVAPESSNQTAGLTPKGNKDEHSNGGNLGRGSNKSIGRIIPGEESDSDYEDLEIEGDPLDEDDDEFMKRVKKTKAERLAIVDHSKIDYEPFKKNFYIEVKEIAKLTPQEVAAYRKDLELKIHGKDVPKPVKSWNQIGLTSKILETIKKLNYEKPMTIQAQALPVIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIKKFAKVLGLRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIQPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPENERFFRLLELLGEWYEKGKILIFVHSQEKCDALFKDLLRHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSIAARGLDVRELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEEARYGPDLVKALELSEQIVPDDLKALADGFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEVRRAAKKAQAREYGFEEDKSDSEDEDEGIRKAGGDISQHPALAQILVAATKANTPAMPSTSQVISNGGLPVSLPAVLGLQTAGVMPGTGLPVVPSDGATRAALAAMNLQNKLAKIAGAMPEHYEAELEINDFPQNARWKVTHKETLGPVSEWTGAAITTRGQYFPPGKVPGSGERKLYLQILCCIIGDLFSLFCMSHRLPPLHLPLDFPRGEVVVIMVQHFCIEVQFNRQILCCIIAQGIS 1146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g1323 1146 MobiDBLite consensus disorder prediction 297 315 - -
Lele32g1323 1146 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 712 873 IPR001650 -
Lele32g1323 1146 CDD DEADc_DDX46 481 702 - -
Lele32g1323 1146 SMART ultradead3 511 716 IPR014001 -
Lele32g1323 1146 SMART helicmild6 753 834 IPR001650 -
Lele32g1323 1146 MobiDBLite consensus disorder prediction 908 939 - -
Lele32g1323 1146 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 647 655 IPR000629 -
Lele32g1323 1146 Pfam Helicase conserved C-terminal domain 728 834 IPR001650 -
Lele32g1323 1146 MobiDBLite consensus disorder prediction 1 269 - -
Lele32g1323 1146 CDD SF2_C_DEAD 713 843 - -
Lele32g1323 1146 Gene3D - 444 701 IPR027417 -
Lele32g1323 1146 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 523 701 IPR014001 -
Lele32g1323 1146 MobiDBLite consensus disorder prediction 908 922 - -
Lele32g1323 1146 FunFam probable ATP-dependent RNA helicase DDX17 454 704 - -
Lele32g1323 1146 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 492 520 IPR014014 GO:0003724
Lele32g1323 1146 Gene3D - 702 876 IPR027417 -
Lele32g1323 1146 Pfam DEAD/DEAH box helicase 517 688 IPR011545 GO:0003676|GO:0005524
Lele32g1323 1146 MobiDBLite consensus disorder prediction 362 392 - -
Lele32g1323 1146 Coils Coil 103 137 - -
Lele32g1323 1146 PANTHER RNA HELICASE 455 912 - -
Lele32g1323 1146 MobiDBLite consensus disorder prediction 407 423 - -
Lele32g1323 1146 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 564 848 IPR027417 -
Lele32g1323 1146 MobiDBLite consensus disorder prediction 1 336 - -
Lele32g1323 1146 Coils Coil 224 261 - -
Lele32g1323 1146 MobiDBLite consensus disorder prediction 358 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g1323 Lele-ChrLele32 14213177 14217795 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele32g1323 477 854 Eukaryotic Initiation Factors Gene Family AT3G19760 32.190 1.39e-58 206