Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g1291 ATGCCAGTGTTGTTCTCTGCACGGTTGGTTCTGCTAGTTGGAGAGACATTGCCCTTGCGAAGGTTCTTGCCCGCTTCAAGTATTTCTTGCTTTCATAGCAGCGTCCATTGTTTAAGTCGGATAGAGCCCCAACATGCGCCCCTTACTCCCTTAAGCATTGGTTTGAATAATGAAAATGAAACTAGGAAGGATAACAAAGTCAATAAACTGAAGCAATTGGGTTCCTCCTCTTTAGACTCAAAGAGCAGAGCAAAGACCATTGGTATCAATAAGATTAAAGCAGTTGGAGCAACAAAGAAGCAGCCGGTAGAATCTGCTCTGTTTGCCTCTAAGTCTTTTTCTGAACTTGGCCTCCCTCATTTATTGGTTGAGAGATTGGAAAATGAAGGTTTTATGGTTCCAACTGAAGTGCAGTCTGCAGCAATTCCTACAATTTTGAATAATCATGATGTCATAATTCAATCTTACACAGGATCAGGGAAAACATTGGCTTATCTTCTTCCCATTTTATCTAATGTTGGCCCTTTGAGGAACAAAACTTCTGAAGGTAACAGTAGTGGTGAACCTGGGAAGAAAATGGGAATAGAGGCTGTAATTGTTGCTCCTTCTAGGGAACTGGGTATGCAGATAGTGAGGGAGTTTGAGAAGATACTTGGACTTGCTAACAAAAAGGCTGTTCAACAGCTTGTGGGAGGCGCGAACAGATCCAGGCAAGAAGAAGCTCTCAAGAAAAATAAACCTGCCATTGTTGTTGGCACACCTGGTAGAATAGCAGAGATCAGTGCAGCCGGAAAACTTCACACCCATGGTTGTCGTCATTTGGTCCTAGACGAAGTCGATGAACTCCTGTCGTTTAACTTTCGGGAGGACATGCACCGGATACTAGAACATGTGGGGAGAAGATCAGGAGCTGACCCACGAGCTCAAAATGGTACTGTTCCTAGACGGGCTGAGCGTCAAACTATTATGGTGTCTGCAACTGTTCCGTTTTCTGTTGTGAGGGCAGCCCGGAGCTGGGCGCATGATCCGCTTCTTGTCCAAGCCAATAGAGTTGGCCCGCTCGAAACCATTTCTCCTTCCAAACCTGTCAATTTATCAGGATCTGCTGCACCTAGCTCAAATTCTAACTCCACTACTACCCTTACACAGGCAGCAGAGAGTCTACCTCCAGCATTAAAACATTATTACTGTGTCACAAAGTTACAGCATAAAGTTGATACCTTGAGAAGGAGTATTAATGCACTAGACGCCAAATATGTTATAGCTTTCATGAACCATATCAAGCAACTTAAGGATGTTGTCTTCAAGCTAGAGGCACGTGGGATGAAAGCTGCTGAGTTACATGGGGATCTTGGGAAACTTGCTAGGTCAACAACTCTGAAAAGGTTCAAGAATGGTGAGGTGAGAGTGCTCGTGACCAATGAATTATCCGCAAGGGGATTGGATGTGGCTGAATGCGATCTCGTGGTTAATTTGGACTTACCCACGGACTCGATTCACTATGCACACCGAGCTGGTAGGACAGGAAGGCTCGGGAGGTCTGGTACAGTGCTTTCAATATGTGAAGACCCAGAAGTGTTTGTTGTGAAGAAACTGCAAAAGCAGCTTGGGGTACCAATAGCGAGCTGTGATTTTGTGGAGGGAAAGCTACTTGTCAAAGAAGAAGAGAAAATGCTAAATACTGTGAGATAA 1692 0.4456 MPVLFSARLVLLVGETLPLRRFLPASSISCFHSSVHCLSRIEPQHAPLTPLSIGLNNENETRKDNKVNKLKQLGSSSLDSKSRAKTIGINKIKAVGATKKQPVESALFASKSFSELGLPHLLVERLENEGFMVPTEVQSAAIPTILNNHDVIIQSYTGSGKTLAYLLPILSNVGPLRNKTSEGNSSGEPGKKMGIEAVIVAPSRELGMQIVREFEKILGLANKKAVQQLVGGANRSRQEEALKKNKPAIVVGTPGRIAEISAAGKLHTHGCRHLVLDEVDELLSFNFREDMHRILEHVGRRSGADPRAQNGTVPRRAERQTIMVSATVPFSVVRAARSWAHDPLLVQANRVGPLETISPSKPVNLSGSAAPSSNSNSTTTLTQAAESLPPALKHYYCVTKLQHKVDTLRRSINALDAKYVIAFMNHIKQLKDVVFKLEARGMKAAELHGDLGKLARSTTLKRFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRSGTVLSICEDPEVFVVKKLQKQLGVPIASCDFVEGKLLVKEEEKMLNTVR 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g1291 563 Pfam DEAD/DEAH box helicase 135 332 IPR011545 GO:0003676|GO:0005524
Lele32g1291 563 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 142 346 IPR014001 -
Lele32g1291 563 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 407 551 IPR001650 -
Lele32g1291 563 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 196 532 IPR027417 -
Lele32g1291 563 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 111 139 IPR014014 GO:0003724
Lele32g1291 563 SMART helicmild6 431 512 IPR001650 -
Lele32g1291 563 Gene3D - 71 349 IPR027417 -
Lele32g1291 563 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 89 550 - -
Lele32g1291 563 CDD SF2_C_DEAD 392 521 - -
Lele32g1291 563 Pfam Helicase conserved C-terminal domain 408 512 IPR001650 -
Lele32g1291 563 MobiDBLite consensus disorder prediction 359 382 - -
Lele32g1291 563 Coils Coil 398 418 - -
Lele32g1291 563 Gene3D - 392 562 IPR027417 -
Lele32g1291 563 CDD DEADc 122 347 - -
Lele32g1291 563 SMART ultradead3 130 357 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g1291 Lele-ChrLele32 13831559 13833250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele32g1291 110 540 Eukaryotic Initiation Factors Gene Family AT5G11200 26.802 2.67e-40 150