Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g1290 ATGGCTACCACTACAACCGCCGCCGCCGCTCCTCCGCGCCAGCTGTCCCAGAAGGAGGCTGACATCCAGATGATGTTGGCCGCCGAGGTCCACCTCGGAACCAAGAACTGCAACTTCCAAATGGAGCGATATGTGTTCAAGCGCCGCAACGATGGTATCTACATCATTAATCTTGGAAAGACATGGGAGAAGCTTCAGCTTGCTGCTAGGGTTATTGTTGCCATTGAGAACCCTCAAGATATTATTGTTCAGTCTGCTAGGCCTTATGGTCAAAGAGCTGTTCTCAAGTTTGCTCAATACACTGGTGCCCATGCACTTGCTGGGAGACACACCCCAGGAACATTCACTAATCAGCTCCAGACCTCTTATAGCGAGCCTCGCCTTCTAATTCTTACTGATCCAAGAACCGACCATCAGCCCATCAAGGAAGCTGCTCTTGGAAATATTCCAACTATTGCTTTTTGTGACACTGATTCTCCCATGCGATATGTTGATATTGGGATTCCTGCCAACAACAAGGGGAAACACAGCATTGGTTGCCTTTTCTGGCTCTTAGCAAGGATGGTACTGCAGATGCGTGGTACTATTCGTCCGGGGCTCAAGTGGGATGTGATGGTGGACTTATTCTTCTATAGAGAACCTGAGGAGGCCAAACAACTAGAGGAAGAGGAGACGCCTGCCGTTCAAGACTATGCGGCTGCTGATTTTGGTGCCGGTATTGGTGCCATTGCTGATGGCCAGTGGCCTGTTGCAGCTGATCAACCATGGACTGAACCGGCACCACAATCTATTCCGGCAGTTCCTGGTGTCAGCTGGACCCCTGAAGCTACGGGGGATTGGGGTGAACCCGTCCAAGCTCCACAAGTTCCTCAAGTTCCTGTTCCCGGAACTGGAATCGAGAACGTTCCTGCTACCGGCTGGGATTAA 927 0.5113 MATTTTAAAAPPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHALAGRHTPGTFTNQLQTSYSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQLEEEETPAVQDYAAADFGAGIGAIADGQWPVAADQPWTEPAPQSIPAVPGVSWTPEATGDWGEPVQAPQVPQVPVPGTGIENVPATGWD 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g1290 308 ProSitePatterns Ribosomal protein S2 signature 1. 22 33 IPR018130 GO:0003735|GO:0005840|GO:0006412
Lele32g1290 308 Pfam Ribosomal protein S2 123 189 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lele32g1290 308 Pfam Ribosomal protein S2 25 120 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lele32g1290 308 CDD RPS2 25 191 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lele32g1290 308 FunFam 40S ribosomal protein SA 21 227 - -
Lele32g1290 308 TIGRFAM uS2_euk_arch: ribosomal protein uS2 17 213 IPR005707 GO:0003735|GO:0006412|GO:0015935
Lele32g1290 308 PRINTS Ribosomal protein S2 signature 101 118 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lele32g1290 308 PRINTS Ribosomal protein S2 signature 52 61 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lele32g1290 308 PRINTS Ribosomal protein S2 signature 143 154 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lele32g1290 308 PRINTS Ribosomal protein S2 signature 164 178 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lele32g1290 308 PRINTS Ribosomal protein S2 signature 22 40 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lele32g1290 308 PRINTS Ribosomal protein S2 signature 126 143 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lele32g1290 308 PANTHER 40S RIBOSOMAL PROTEIN SA 12 289 IPR005707 GO:0003735|GO:0006412|GO:0015935
Lele32g1290 308 Hamap 40S ribosomal protein SA [rps-0]. 9 275 IPR027498 GO:0003735|GO:0006412|GO:0015935
Lele32g1290 308 MobiDBLite consensus disorder prediction 273 308 - -
Lele32g1290 308 Gene3D - 21 227 - -
Lele32g1290 308 SUPERFAMILY Ribosomal protein S2 17 207 IPR023591 -
Lele32g1290 308 ProSitePatterns Ribosomal protein S2 signature 2. 126 150 IPR018130 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g1290 Lele-ChrLele32 13825942 13827937 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele32g1290 1 276 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 74.460 2.01e-149 419