Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g1287 ATGTTCTTGTTGCATTCCACCCTCTCTCATCTTCCTCCGCCTCTGATCTCTTCCGTCTCATCAGGCCGCCACAGAAATCCTATTCTTCCCCATCAACTTCCCCAACATCGCCTCAGAAACCGCGACGCTTCTTCTACCTTCAAAATCACTTGTCTTGCAGCTCTATCATTCGATGACATCGTTCAATTATCCCATAATAAGGTTCTGATTGCGGCTGGTGCTTCTGCGGCGATTGGGCAGATTTCGAAGCCCTTTACTTCTGTGTTTCTATATGGGAAAGAGTTTGATATCAAGGCGGTTATTCAGGCCGGAGGGTTTCCATCAACACATTCTTCCGCAACAGTGGCTTCTGCAACATTCCTTGGTCTTGAGAGAGGCTTCTCCGATCCCATTTTTGGTCTATCAGTTGTTTTTGCTGGCCTCATTATGTATGATGCTCAGGGTGTAAGAAGAGAAGTAGGGAATCATGCCAAGGTATTGAACAAACTACTCCAGATACTAGAAAATTCAGTAGATTCCAAAGATAGAGATGATAGGTTGATCAATTCCCAGCTAGGAACAACATCAACATATTTGAATAATGTAAAAATCATAGAGAAGTCCCTTGTTTCCCAAGAAGCCAATTCCTCAGAAGCAAAACCAAGGAATTCATCGGTGTTGGTCGAATCTGACAGTAAAAGAAGGAAAACCAGTGAGGAGCTATCATCATCCTTAGGCTGCTCAACAGAAGGAGAAGAACTATCAAAGTTGGGAGCCATTGGTTTATTGCCATTAAAAGAATCTATAGGGCATACTGAGGTTGAAGTTATCGCTGGAGCTCTATTAGGTTTATTGGTTGGCTTTGCTGTGTACAATTTCTTGCGATATCTTTCTACCGATATGTATTTTCCTCAACGCAAAGACTCCATTCTTCGATACTCCTCTTATGTTGCTTCCGATGCCGACATTGGCCCACCTGGTGTTTCTACCAGACTCTCCAGTGACGCCTCCGGGCAAACATCTACAACCGCTTCCCAGTTGCTATCTCAAGCTTCTTGGCCTGCTGCTATTGCTTCAGCTGCTGCGGCAAATGTTGGGTCTTCTGCATTTGAGTCGATTGTTAACATGAAGCGCTCTTCTGATGGTAGTTTTTGGGAAGGCCTTCACATCAGTGGATCTTTGAAAATGTTCCTTCTTCAATTTGAAGAGATGGGAGCTGAGATGAAGACATCTGCATCTGTTCATCATGTTCCAGATGTTGTTACAAGTGAGACTCTTCCTGAGAGACCAGGAATACCAGATTGTCCTTACTTTCTTAAAACTATGAGATGCAAGTTTGGTTCAAGGTGTAAGTTTAATCATCCCAAGCATTTGTTTGAAAATGCTGATATTTCTACCTTACCTGAGAGGCCTTGGGAGCCCCCATGCGCGTTCTACATGAAAACTGGAAAATGCAAGTTTGGCATTACCTGTAAATTTCATCACCCAAGAGACATACAGATTCAGCTATCTGAAGAACAGAATGGTGCTGTTGAGCAGACCCACTTGACCCCTAATATAAAGGGGGCTTTAGGGGATACACAATTATCTAATATTTTTAGTTCGTACACTGCTCCTGTATTGCATAATAGCAAAGGGCTTCCTATAAGACTGGGTGAAGTAGATTGTCCATTCTACATGAAAACTGGCAGTTGCAAATATGGTGCTACTTGCCGCTACAATCATCCTGATAGGAATGTAATTAATCCACCTGCTGCTGCTTTAGGCCATTCTGTTTTGACATCATCAGCTGCTAATCTAAACTTTGGAAGTGTAAATCCAGCTGCATCAATTTATCAAGCTTTTGACCCCAGATTGTCAATCATATTCAGTCCAACTGATCCATGTAGCTTGCCAGTCCCAGCACCATCACAGTCAAATGCAGCCGCACAACAAGCTGTTAAACTCACTCTTGCAGGATTACCCAGGAGAGAGGGTGTTGTCATCTGTCCATATTATTTGAAAACTGGCACCTGCAAGTTTGGTGGAACCTGCAAGTTTGACCACCCTCCTCCTGGAGAAGTTATGGAACTGGCAAAGTCACAAGGAGCAGAAACTGATGAAGGAGAGGAAGCCGGTGCTGATGAAAAACAGGCTGATTCTGTTCAGAAAAAGTAA 2136 0.434 MFLLHSTLSHLPPPLISSVSSGRHRNPILPHQLPQHRLRNRDASSTFKITCLAALSFDDIVQLSHNKVLIAAGASAAIGQISKPFTSVFLYGKEFDIKAVIQAGGFPSTHSSATVASATFLGLERGFSDPIFGLSVVFAGLIMYDAQGVRREVGNHAKVLNKLLQILENSVDSKDRDDRLINSQLGTTSTYLNNVKIIEKSLVSQEANSSEAKPRNSSVLVESDSKRRKTSEELSSSLGCSTEGEELSKLGAIGLLPLKESIGHTEVEVIAGALLGLLVGFAVYNFLRYLSTDMYFPQRKDSILRYSSYVASDADIGPPGVSTRLSSDASGQTSTTASQLLSQASWPAAIASAAAANVGSSAFESIVNMKRSSDGSFWEGLHISGSLKMFLLQFEEMGAEMKTSASVHHVPDVVTSETLPERPGIPDCPYFLKTMRCKFGSRCKFNHPKHLFENADISTLPERPWEPPCAFYMKTGKCKFGITCKFHHPRDIQIQLSEEQNGAVEQTHLTPNIKGALGDTQLSNIFSSYTAPVLHNSKGLPIRLGEVDCPFYMKTGSCKYGATCRYNHPDRNVINPPAAALGHSVLTSSAANLNFGSVNPAASIYQAFDPRLSIIFSPTDPCSLPVPAPSQSNAAAQQAVKLTLAGLPRREGVVICPYYLKTGTCKFGGTCKFDHPPPGEVMELAKSQGAETDEGEEAGADEKQADSVQKK 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g1287 711 SUPERFAMILY CCCH zinc finger 653 677 IPR036855 GO:0046872
Lele32g1287 711 ProSiteProfiles Zinc finger C3H1-type profile. 543 571 IPR000571 GO:0046872
Lele32g1287 711 ProSiteProfiles Zinc finger C3H1-type profile. 650 678 IPR000571 GO:0046872
Lele32g1287 711 MobiDBLite consensus disorder prediction 677 711 - -
Lele32g1287 711 Gene3D - 625 688 - -
Lele32g1287 711 Gene3D - 528 575 - -
Lele32g1287 711 SMART c3hfinal6 650 677 IPR000571 GO:0046872
Lele32g1287 711 SMART c3hfinal6 422 449 IPR000571 GO:0046872
Lele32g1287 711 SMART c3hfinal6 543 570 IPR000571 GO:0046872
Lele32g1287 711 SMART c3hfinal6 463 490 IPR000571 GO:0046872
Lele32g1287 711 FunFam Zinc finger CCCH domain-containing protein 37 529 576 - -
Lele32g1287 711 ProSiteProfiles Zinc finger C3H1-type profile. 468 491 IPR000571 GO:0046872
Lele32g1287 711 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 546 569 IPR000571 GO:0046872
Lele32g1287 711 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 652 677 IPR000571 GO:0046872
Lele32g1287 711 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 467 490 IPR000571 GO:0046872
Lele32g1287 711 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 425 449 IPR000571 GO:0046872
Lele32g1287 711 ProSiteProfiles Zinc finger C3H1-type profile. 422 450 IPR000571 GO:0046872
Lele32g1287 711 SUPERFAMILY CCCH zinc finger 547 571 IPR036855 GO:0046872
Lele32g1287 711 Gene3D - 421 502 - -
Lele32g1287 711 SUPERFAMILY CCCH zinc finger 468 491 IPR036855 GO:0046872
Lele32g1287 711 MobiDBLite consensus disorder prediction 208 240 - -
Lele32g1287 711 Pfam Divergent PAP2 family 65 279 IPR003832 -
Lele32g1287 711 PANTHER PROTEIN PHOSPHATASE RELATED 633 701 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g1287 Lele-ChrLele32 13795610 13808127 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele32g1287 418 676 C2H2 Transcription Factor Family AT5G16540 34.201 2.25e-39 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele32g1287 DUF212 5.2e-33 CL0525