Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g1254 ATGGCTTTATCCTCTTCCCTTTTCTCACCACCCCATCTTCTTTCCAATTACACTACAAAATCCATTTCAACTTCTTCAAGATTCTCTAATCAACTTCTGAAATCTGTCTTTCCACAACCCTTTGTCAAATCGGCGCCTTCTCTGGTAGTTACAACACCTAGACACTACCGGAGACCCTTTGCTGTTGCAGAAGAAACTGTGGTCACTACTTCACCGGACCCGAAATCCGACGCCGCGAGGAAGCTCTATATTGGGAACATTCCACGCAATATCGATAACAATGAGCTTGCCCGGGTTGTTGAAGAGCATGGTGCTGTTGAGAGAGCGGAGGTTATGTATGACAAATACTCGGGAAGGAGTCGTCGCTTTGCATTTGTTACAATGAAGACGGTTGAGGATGCAAATGCAGTAATTGAGAAGCTAAATGGCACTGAAATCGGAGGTCGTGAAATCAAAGTAAATATAACAGAAAAACCTTTGCAAACAGTTGATCTATCTATTCTCCAGGCAGAGGAATCTGAATTTGTTGACAGTCCCCACAAAGTGTATATAGGAAATCTTGCCAAAACAGTAACAACTGATGTACTTAAAGACTTCTTCTCTTCAACTGGAAATGTTCTTAGTGCCAAGGTTTCACGTGTTCCTGGGACCTCAAAATCCACTGGTTTTGGTTTTGTCTCATTTTCTTCAGCTGAGGATGTTGAAGCTGCAATCTCATCTTTCAACAATTCCTTGTTAGAAGGGCAACGAATTCGTGTGAACAAGGCATAA 771 0.4241 MALSSSLFSPPHLLSNYTTKSISTSSRFSNQLLKSVFPQPFVKSAPSLVVTTPRHYRRPFAVAEETVVTTSPDPKSDAARKLYIGNIPRNIDNNELARVVEEHGAVERAEVMYDKYSGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLQTVDLSILQAEESEFVDSPHKVYIGNLAKTVTTDVLKDFFSSTGNVLSAKVSRVPGTSKSTGFGFVSFSSAEDVEAAISSFNNSLLEGQRIRVNKA 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g1254 256 SMART rrm1_1 181 254 IPR000504 GO:0003723
Lele32g1254 256 SMART rrm1_1 81 154 IPR000504 GO:0003723
Lele32g1254 256 Gene3D - 166 256 IPR012677 -
Lele32g1254 256 FunFam 30S ribosomal protein 2, chloroplastic 167 256 - -
Lele32g1254 256 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 80 158 IPR000504 GO:0003723
Lele32g1254 256 Gene3D - 61 165 IPR012677 -
Lele32g1254 256 PANTHER OS02G0815200 PROTEIN 31 255 - -
Lele32g1254 256 SUPERFAMILY RNA-binding domain, RBD 175 256 IPR035979 GO:0003676
Lele32g1254 256 SUPERFAMILY RNA-binding domain, RBD 71 158 IPR035979 GO:0003676
Lele32g1254 256 CDD RRM_HP0827_like 81 158 - -
Lele32g1254 256 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 182 252 IPR000504 GO:0003723
Lele32g1254 256 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 152 IPR000504 GO:0003723
Lele32g1254 256 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 180 256 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g1254 Lele-ChrLele32 13466855 13469635 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele32g1254 67 256 Eukaryotic Initiation Factors Gene Family AT1G22760 27.551 5.33e-12 63.5