Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g1247 ATGAGTGTTATGTATAGTCCCAGTGTTCTAAATTACTCAGAGGGTGAGCTTCGAATAAACCCAGAAATGGATTCAATTCATCACCACTTGAATTCTGGATTAATGAGGTACAGTTCTGCTCCAAGCTCATTTCTGGCAAGCCTTGTTCAGAATGAGGAAGCTTCTAGAAGCATATATCATCATCATCGGCGTCAGAATCCATCTTCTTCAAGTGCAGAAATGGAAGCCATGTTGGCAAAGCTGGTTTCTTCATCATCAGACAACGGATGGATCAAGCAGGAAGAAACAGGGGCCTCTGTTTCAGAGGGACACAATGGGTATAATAATTCTAATTATGGTTCTCAGATGATTTACCAATCTCGGACTCAGCAAGTTCAAGACTTTCCAAATGGGTCTTTAGGTTCTTCTTCTGGGAATGCTTTTGATGGCTCATTCAATTCATCTGAGTCCGAAATCACGTCTAATAATAATAATAATAATCTCCTTAGACACAAAAGCTCCCCTGCTGGTCTGTTCAACAATTTCTCAGTTGAAAATGGTTTTGCAACATGGGGTGATCATGTTTCAAATGGCCAAGCTTCTACATCAGCTAGGGCGTTATCTTCTTGTTCAAGACAATTGCCTGATATAGCAGAAGATGGGAATGAAACCCTAGAAGAAGCAACTTATGTTGAAATTGAAAATAGAAGAAATCTGAGAAATGACAAAAATGGCAACAACAACCCTGATGAATGTTACATTCCCAGCTTCACAAGTGACTTCTGGGATTCTCCTTCATTCAATGACACCAAAACAGCTAGTGACAATGATGAACTCATGTTTTCTACTTCAAATGGTTTTGAAACTCAGAATGCTGATTTTGGATATAATCAGAATGCTGTTGGTTTGACTCATCATTTGAGTCTGCCTAGTTCTTCAACAAAGTCAAAGATGAGTGCCATCGAGAAGTTTCTTCAAGTTCAAGGATCTGTTCCTTGTAAGATTCGAGCTAAACGAGGTTTCGCCACTCACCCCCGGAGCATTGCAGAGAGGGTAAGAAGAACAAGAATCAGTGAGAGAATAAAGAAGTTGCAAGATCTCTTCCCAAAATCTGAAAAGCAAACAAGCACAGCAGAGATGTTGGATTTAGCAGTTGATTATATTAAAGATTTGCAGAAACAAGTTCAGATGCTCACAGATACTAAAGCAAAGTGCAAGTGTACAAGTAACAAGATGCATAACTCAGTGACTTTGTAG 1236 0.3948 MSVMYSPSVLNYSEGELRINPEMDSIHHHLNSGLMRYSSAPSSFLASLVQNEEASRSIYHHHRRQNPSSSSAEMEAMLAKLVSSSSDNGWIKQEETGASVSEGHNGYNNSNYGSQMIYQSRTQQVQDFPNGSLGSSSGNAFDGSFNSSESEITSNNNNNNLLRHKSSPAGLFNNFSVENGFATWGDHVSNGQASTSARALSSCSRQLPDIAEDGNETLEEATYVEIENRRNLRNDKNGNNNPDECYIPSFTSDFWDSPSFNDTKTASDNDELMFSTSNGFETQNADFGYNQNAVGLTHHLSLPSSSTKSKMSAIEKFLQVQGSVPCKIRAKRGFATHPRSIAERVRRTRISERIKKLQDLFPKSEKQTSTAEMLDLAVDYIKDLQKQVQMLTDTKAKCKCTSNKMHNSVTL 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g1247 411 FunFam Transcription factor bHLH130 family 335 404 - -
Lele32g1247 411 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 337 400 IPR036638 GO:0046983
Lele32g1247 411 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 40 405 - -
Lele32g1247 411 MobiDBLite consensus disorder prediction 126 161 - -
Lele32g1247 411 Gene3D - 336 408 IPR036638 GO:0046983
Lele32g1247 411 Pfam Helix-loop-helix DNA-binding domain 340 385 IPR011598 GO:0046983
Lele32g1247 411 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 334 384 IPR011598 GO:0046983
Lele32g1247 411 SMART finulus 340 390 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g1247 Lele-ChrLele32 13439654 13441769 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele32g1247 32 390 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 33.846 1.18e-48 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele32g1247 HLH 3.9e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g1423 29 20942777 20944802 Lele32g1247 32 13439654 13441769 hybridization
Lele30g0142 30 1405184 1412364 Lele32g1247 32 13439654 13441769 hybridization