Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g1240 ATGGCAAATGGCCATAATGGTTCTTCCTCAAACAACGACACGAACACGTCAGAGAGAAAGCCCGGTGGGTTCTCTCTCCCTGTGTTTCGCTTCTTTGCAGTACATCGAAGGGAAATCATGGTTCAGATTCAGAAAACGGAGAAGGAAGAGACCGAGTTCAAGGTTCCTGAAACAATCACCCCTTGCGTCAACAACTGTGGTGTCACGGGTAATCCGGCAACCAATCATATGTGTCAGAAGTGCTTCACCGCCACCGCCGCTGCCGCTTCCTCAACCACAACCTCTTCTACAGGGATTTCTGCTCCTCCTAAATTTTCCGACGATAAAAGTTCTAGATCCGCACCGTCTCGCTCGCCAAAGAGGTCGCACCCATCTGACGAGGAGCCGACGCAGCATATATTGTCAGATCGGAGGAAATTGGATGAGACGACTCCGTCTGAAGCCAAGCGGGTGGTGAATAGATGTTCGGGATGCCGAAGGAAGGTTGGGTTGACCGGATTCAGATGCCGGTGTGGCGAGTTGTTCTGCGCTGAGCATCGGTACTCCGATCGACACGACTGCTGTTACGACTACAAAGCAGCCGGACGTGAGGCGATCGCGAGGGAAAATCCGGTGGTAAAAGCGGCGAAGATCGTGAAGGTTTGA 645 0.524 MANGHNGSSSNNDTNTSERKPGGFSLPVFRFFAVHRREIMVQIQKTEKEETEFKVPETITPCVNNCGVTGNPATNHMCQKCFTATAAAASSTTTSSTGISAPPKFSDDKSSRSAPSRSPKRSHPSDEEPTQHILSDRRKLDETTPSEAKRVVNRCSGCRRKVGLTGFRCRCGELFCAEHRYSDRHDCCYDYKAAGREAIARENPVVKAAKIVKV 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g1240 214 FunFam Zinc finger A20 and AN1 domain-containing stress-associated protein 1 42 130 - -
Lele32g1240 214 ProSiteProfiles Zinc finger AN1-type profile. 149 195 IPR000058 GO:0008270
Lele32g1240 214 ProSiteProfiles Zinc finger A20-type profile. 56 90 IPR002653 GO:0003677|GO:0008270
Lele32g1240 214 SMART AN1_Zf_4 155 192 IPR000058 GO:0008270
Lele32g1240 214 MobiDBLite consensus disorder prediction 1 22 - -
Lele32g1240 214 Pfam AN1-like Zinc finger 155 192 IPR000058 GO:0008270
Lele32g1240 214 SMART A20_3 59 83 IPR002653 GO:0003677|GO:0008270
Lele32g1240 214 Gene3D - 45 129 - -
Lele32g1240 214 Pfam A20-like zinc finger 61 82 IPR002653 GO:0003677|GO:0008270
Lele32g1240 214 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 62 97 - -
Lele32g1240 214 MobiDBLite consensus disorder prediction 92 146 - -
Lele32g1240 214 FunFam Zinc finger AN1-type containing 6 129 210 - -
Lele32g1240 214 MobiDBLite consensus disorder prediction 92 109 - -
Lele32g1240 214 PANTHER AN1-TYPE ZINC FINGER PROTEIN 60 213 - -
Lele32g1240 214 Gene3D - 140 200 IPR035896 -
Lele32g1240 214 MobiDBLite consensus disorder prediction 1 21 - -
Lele32g1240 214 MobiDBLite consensus disorder prediction 110 146 - -
Lele32g1240 214 SUPERFAMILY AN1-like Zinc finger 141 208 IPR035896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g1240 Lele-ChrLele32 13386315 13387191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele32g1240 49 214 C2H2 Transcription Factor Family AT3G52800 36.905 3.56e-29 105
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g1416 29 20898130 20898657 Lele32g1240 32 13386315 13387191 hybridization
Lele30g0148 30 1477340 1478026 Lele32g1240 32 13386315 13387191 hybridization