Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g1235 ATGGTTTTGTGGTCATATCCACCTACAGCATGGCAATTAGCCATAACTGCCAGTGCATGTATAGCCGGTGCTTCATTATTTGCTGTTGGAGCTTATCTCTCTCTGGTAAATATAGGTCCTCAACAAGCTCGAGCAAAAGCTCGCAGCGAATTAATCAAGAACCATCTGCGTAAGATCTCAATTTCCTTGACCTTACATTTGGTGAAACATCCAGCTGTATATGGATTTTTGTGGGATCATAAAATGGAGACAGACACAATGGGTCTAAACAAGGTAACCCTAGCGAAAATCGCAGCTAAGATTGAAAGTAGCAGTGTAATGTATGAAAGTCGTAGTGAACAACTAATAAGCCGCAGTGCATTCCCAAAATCTGCAAGTAATACCTCGAGTAACTTGGCAACTAATCACTGCTTAGTTAATCCTGGGATGAATCTAGAAAGACAAGATGGTGAACATGTTAATGGAAGTCCTAATCAGACAAAATTAATTATGACAAATGTTCAAGAAGAGGCTGAAGGAACAGCGACACTCCTATTCATGACCTCAAAGCTACTTCAGATTTGGGATTCTTTGCAACAAATTTCACAGATCTCCCTATGCCTAAGAGGTGTGAACGAAGAAATAAAGGGCATTTGTGAGTCATGGTATTGCAAGTTCTTTGCTCGTGGAGCATGTATCAAAGGGGACCAATGTGAATATTCTCATGCCAGAAAGAATCCTTCAATTAATATTTGTAGGTTCTATCAGAAAGGAATATGTGCTTTTGGTGGTCAATGCAAATATAAACATATCCAAACTTCTCAAGCGCAATCTTTGAAACATGAAAGCCAGCTCCTGAATTTTGATAGACATGGAAAGAGTGTAAAACTTAAGCATCAAGATTACCAAAAGAATTGCGATGCCAGTGAACCCAGTACTGCTTTACCATTAAGAAAAAAGTGTTCTTGTGTTCCTGGAGACCTATGTGTGTACTGTAAAAAGTTCTGCTTTTATCATTCTGAACCAAATGTGAGAGAGGAGCATTTGCAAACTTGTGAGAAAAAGGAAAAGTACCTTGAGACTTTGAATAAAAGTCAAGAAATAGAGTGCAGAATTTGCTATGAACGTGTTCTTTCAAAGCCTAAAGCAGATGAATGTAAGTTCGGTATTCTTTCTGAGTGCGATCATCCTTTCTGTTTATCATGTATCAGGAATTGGCGTAGTAGTGCTCCAACATCAGTGATAAGGTTAAGGTCCCATAGAATTGTGAAGACCTGCCCCATGTGCCGGAAGTTATCATATTATGTGATTCCAAGTACTATATGGTATTTTACAATGGAAGAGAAACGGGAAATTATTGGCAACTACAAGATAAGCTGCAAGTTGATTAATTGCAGGCATTTCGACTTCGGAAATGGGTATTGTCCCTTTAGGGATATTTGCTTCTACAGGCATACTGTGAAGCCTGGTTCGTATACATGGATACATCACAAACCACCACCACCTCCACGCAGATCATATCTAATGAATATGCTCAATCAATTTTGGGAATCAGTCATTCCTTCAAGTTTGGAGTTTTTCATTGATATGGATCCATCAGAGATAATACGTTCATCAGAGACACTAGTTAATTCAATGCAGTTTGATGCTGACACCTCAAATGAAGAAACTGACCCTTTTAGCTTGGCTGCTATGTCAGAAGTTTTAGATTCTAGTTCAGACACAATTGATTCTGAAGATTTGAATCTATTTGAGATTATACCATTAAATCATCAGGGTCCGGATGGTTCATGGTGGTTTGGTATTGAAGGTTTTGATGATCAAGAAATGGGTGTTGTGCCTTCTCCAGAGGAGCAGGGTGGTTCATCTTTGTCTGATCCTGATATGCCTCCATCAGAGACAATTGGTAGTTCGTCTGGTCATAAAGAATCAAATAATGAGGAACTGAATCCTGTGGAGCCATCATGA 1947 0.3914 MVLWSYPPTAWQLAITASACIAGASLFAVGAYLSLVNIGPQQARAKARSELIKNHLRKISISLTLHLVKHPAVYGFLWDHKMETDTMGLNKVTLAKIAAKIESSSVMYESRSEQLISRSAFPKSASNTSSNLATNHCLVNPGMNLERQDGEHVNGSPNQTKLIMTNVQEEAEGTATLLFMTSKLLQIWDSLQQISQISLCLRGVNEEIKGICESWYCKFFARGACIKGDQCEYSHARKNPSINICRFYQKGICAFGGQCKYKHIQTSQAQSLKHESQLLNFDRHGKSVKLKHQDYQKNCDASEPSTALPLRKKCSCVPGDLCVYCKKFCFYHSEPNVREEHLQTCEKKEKYLETLNKSQEIECRICYERVLSKPKADECKFGILSECDHPFCLSCIRNWRSSAPTSVIRLRSHRIVKTCPMCRKLSYYVIPSTIWYFTMEEKREIIGNYKISCKLINCRHFDFGNGYCPFRDICFYRHTVKPGSYTWIHHKPPPPPRRSYLMNMLNQFWESVIPSSLEFFIDMDPSEIIRSSETLVNSMQFDADTSNEETDPFSLAAMSEVLDSSSDTIDSEDLNLFEIIPLNHQGPDGSWWFGIEGFDDQEMGVVPSPEEQGGSSLSDPDMPPSETIGSSSGHKESNNEELNPVEPS 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g1235 648 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 244 264 IPR000571 GO:0046872
Lele32g1235 648 SUPERFAMILY RING/U-box 353 429 - -
Lele32g1235 648 CDD RING-HC_MKRN 363 423 - -
Lele32g1235 648 Pfam Zinc finger, C3HC4 type (RING finger) 363 422 IPR018957 GO:0046872
Lele32g1235 648 MobiDBLite consensus disorder prediction 601 648 - -
Lele32g1235 648 ProSitePatterns Zinc finger RING-type signature. 387 396 IPR017907 -
Lele32g1235 648 ProSiteProfiles Zinc finger C3H1-type profile. 216 238 IPR000571 GO:0046872
Lele32g1235 648 SUPERFAMILY CCCH zinc finger 241 263 IPR036855 GO:0046872
Lele32g1235 648 Gene3D - 213 277 - -
Lele32g1235 648 SUPERFAMILY CCCH zinc finger 215 236 IPR036855 GO:0046872
Lele32g1235 648 ProSiteProfiles Zinc finger C3H1-type profile. 452 481 IPR000571 GO:0046872
Lele32g1235 648 MobiDBLite consensus disorder prediction 611 648 - -
Lele32g1235 648 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 339 447 IPR013083 -
Lele32g1235 648 SMART c3hfinal6 452 480 IPR000571 GO:0046872
Lele32g1235 648 SMART c3hfinal6 213 237 IPR000571 GO:0046872
Lele32g1235 648 SMART c3hfinal6 239 265 IPR000571 GO:0046872
Lele32g1235 648 PANTHER MAKORIN-RELATED 217 530 IPR045072 GO:0000209|GO:0061630
Lele32g1235 648 ProSiteProfiles Zinc finger C3H1-type profile. 239 266 IPR000571 GO:0046872
Lele32g1235 648 SMART ring_2 363 422 IPR001841 -
Lele32g1235 648 ProSiteProfiles Zinc finger RING-type profile. 363 423 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g1235 Lele-ChrLele32 13350682 13356520 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele32g1235 zf-C3HC4 1.1e-06 CL0229