Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g1220 ATGAAAAAGCTAACTGTTCATACAGAAGATTCTTTTTCCAGCTTACTGGAACTTGCTGCTAATAACGATGTTGAAGGTTTTAAGCTACTGCTAGATAGGGATGTCTCTTCAATAAATGAAGTTGGGATTTGGTATTGTCGCCAAATTGGGTCAAAACAAATTATTCTTGACAATATAACTCCATTAATGGTTGCTGCAACCTATGGTAGCATTGATGTTCTTGAGCTTATACTCTCTTATCCAGAGGCCAATGTTAATTTCACTTGTGGGATAAGCAAGAGTACTGCCCTTCACTGTGCTGCTTCAGGTGGATCTCATAATGCGGTTGATGTTGTGAAGCTTCTTTTAGAAGCTGGTGCTGATCTTAGTTGCAAGGATGCTAATGGGAATCGTCCTGTTGATGTTGTTGTTGTTCATCCGAAGCTGCAAGTCATGAGAGCAATACTGGAAGAACTTCTTTCTGATAGTGCGTCTCATGACTCCACTGGTGACTGCTCTATTCCAGTGCCTGTTAATTCATCAAATCCTGGTTTACCTGCCCATTTATTTTCTCCCGAGAATGAATTACCGTCCTCTCCAGGCTCACCTCCAGTGGCCTCAAAGTTCCCTGATACCCCTGTTAGCTCTACCTCGGAGAAGAAAGAGTATCCTATTGATCCATCACTTCCTGACATAAAAAACAGCATTTATGCAACGGATGAGTTTCGCATGTTCTCATTCAAGGTTCGTCCTTGCTCCCGTGCATACTCTCATGATTGGACGGAGTGTCCTTTTGTTCATCCAGGAGAGAATGCTCGTAGGAGAGACCCCAGGAAATTCCATTACAGCTGTGTGCCCTGCCCTGATTTTCAGAAGGGGTCTTGTAGGCGAGGGGATATGTGTGAATATGCACATGGAGTATTTGAATGCTGGCTACACCCTGCTCAGTATCGCACTCGACTCTGCAAAGATGGCACAAATTGTAACAGAAGGGTGTGTTTTTTTGCTCACACAGCAGAAGAGTTGCGTCCACTTTATGTGTCCACTGGATCTGCTTTCCCTTCTCCACGAGCATCTGCCTCTGCTCCCAATGTCATGGACATGGCTGCTGCAATGAACCTGTTGCCTGGTTCTCTTTCATCAGTATCTTCCATGTCTCCATCTCACTTTACCCAGCCGATGTCTCCATCTGGTAATGGGATCTCACACTCATCTGCAGCCTGGCCACAGCCCAATGTGCCAGCCCTTCATCTTCCAGGAAGTAATCTTCATTCTAGTCGCTTGAGATCTTCTCTTAGTGCTCGTGACATTCCACCACAAGACTTGAACATGTTGCCAGAATTTGATGGCCAGCAACACCTGTTGAATGATCTGGGCTGTTTCTCACAGCCCCGTCCTGGTGCTGTTGCTTTGAACCGATCTGGTCGGTCCAAGACACTAACTCCATCTAATCTTGAAGAGCTATTTTCTAATGAAGTTTCTTCATCTCCTCGGTATTCTGATCCAGCAGCGGGTTCTGTTTTTTCTCCCACACACAAATCTGCTGTTCTTAATCAGTTTCAACAGATTCAAAGCATGCTATCGCCCATAAATACAAACGTTTTGTCTCCTAAGAATGCTGAGCATCCTCTATTGCAGGCTCCATTTGGTGTGTCTTCTCCTGGAAGGATGTCGCCCAGAAGTGTGGATCCAATATCTCCTATGAGCTCTCGGTTATCTCCATTTGCTCAGCGTGAGAAACAGCAGCAGCAACAGCTGCGAAGTCTTAGTTCAAGGGAACTTGGTTCCAAAATTCCTGCTTCAGTTGTTGGTTCTCCCGGAAACTCATGGTCCAATTGGGGATCTCCTTCTGGGAAAGTTGATTGGTCAATGAATGGAGATGAATTAGGTCGATTGCGAAAATTGTCTTCATTTGAGCATGGGAACAATGGGGAAGAGCCTGATCTATCTTGGGTTCAGTCCCTAGTCAAGGAATCCCCACCTGAGATGATGAAGGAGAAACTGTCAGCTTCTGGTCCCATGGCATCTGCGGAAAAACTGAATTCAATATCTCAGGTTTTATCCGCTGATAATTCTGTGGTAGGAGCTTGGCTTGAGCAAATGCAGCTGGATCAGCTTGCTGTCTGA 2106 0.453 MKKLTVHTEDSFSSLLELAANNDVEGFKLLLDRDVSSINEVGIWYCRQIGSKQIILDNITPLMVAATYGSIDVLELILSYPEANVNFTCGISKSTALHCAASGGSHNAVDVVKLLLEAGADLSCKDANGNRPVDVVVVHPKLQVMRAILEELLSDSASHDSTGDCSIPVPVNSSNPGLPAHLFSPENELPSSPGSPPVASKFPDTPVSSTSEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFQKGSCRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTNCNRRVCFFAHTAEELRPLYVSTGSAFPSPRASASAPNVMDMAAAMNLLPGSLSSVSSMSPSHFTQPMSPSGNGISHSSAAWPQPNVPALHLPGSNLHSSRLRSSLSARDIPPQDLNMLPEFDGQQHLLNDLGCFSQPRPGAVALNRSGRSKTLTPSNLEELFSNEVSSSPRYSDPAAGSVFSPTHKSAVLNQFQQIQSMLSPINTNVLSPKNAEHPLLQAPFGVSSPGRMSPRSVDPISPMSSRLSPFAQREKQQQQQLRSLSSRELGSKIPASVVGSPGNSWSNWGSPSGKVDWSMNGDELGRLRKLSSFEHGNNGEEPDLSWVQSLVKESPPEMMKEKLSASGPMASAEKLNSISQVLSADNSVVGAWLEQMQLDQLAV 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g1220 701 ProSiteProfiles Zinc finger C3H1-type profile. 279 301 IPR000571 GO:0046872
Lele32g1220 701 MobiDBLite consensus disorder prediction 556 588 - -
Lele32g1220 701 MobiDBLite consensus disorder prediction 379 401 - -
Lele32g1220 701 FunFam Zinc finger CCCH domain-containing protein 66 232 300 - -
Lele32g1220 701 PANTHER UNKEMPT FAMILY MEMBER 17 652 IPR045234 -
Lele32g1220 701 SMART c3hfinal6 309 332 IPR000571 GO:0046872
Lele32g1220 701 SMART c3hfinal6 274 300 IPR000571 GO:0046872
Lele32g1220 701 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Lele32g1220 701 SUPERFAMILY Ankyrin repeat 6 151 IPR036770 -
Lele32g1220 701 MobiDBLite consensus disorder prediction 542 603 - -
Lele32g1220 701 Gene3D - 1 175 IPR036770 -
Lele32g1220 701 PRINTS Ankyrin repeat signature 111 125 IPR002110 GO:0005515
Lele32g1220 701 PRINTS Ankyrin repeat signature 58 73 IPR002110 GO:0005515
Lele32g1220 701 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Lele32g1220 701 SMART ANK_2a 92 124 IPR002110 GO:0005515
Lele32g1220 701 SMART ANK_2a 10 40 IPR002110 GO:0005515
Lele32g1220 701 SMART ANK_2a 57 87 IPR002110 GO:0005515
Lele32g1220 701 Pfam CCCH-type zinc finger 279 299 IPR041367 -
Lele32g1220 701 Pfam Ankyrin repeats (3 copies) 18 126 IPR002110 GO:0005515
Lele32g1220 701 MobiDBLite consensus disorder prediction 176 218 - -
Lele32g1220 701 Gene3D - 274 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g1220 Lele-ChrLele32 13166309 13168414 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele32g1220 9 698 C2H2 Transcription Factor Family AT5G12850 55.461 0.0 696
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele32g1220 Ank_2 1.7e-10 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g1385 29 20600425 20602623 Lele32g1220 32 13166309 13168414 hybridization
Lele30g0169 30 1721260 1723371 Lele32g1220 32 13166309 13168414 hybridization