Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g1215 ATGTCTCTCTTGAGGTTGCAAACAGAGAGGCTGAGAGAGAATTGGTCTCATTTCAATGTAATTGAGGCTCTAAATCCTAAATCTTCTTCTGGGACTTCTGCTGCTGCTGCTTCGCAACCTGGATTGAAGAACTCTGCTCGATCAATTCAAGTCTATTTAGAACTTAATTATGGGAAGCATAAGACAGTAAATTCGTTTCCTTTTGCTCATATATACGTAACATCTCGGAGGCCTCTGGCCAATACCTTTATAGCCTATTCCAGGGAAAACTTGGGAAGGATGCCAGGAAAACCTGATGCGGAAGATAGGAGGTATGAAGGTGGTGGAGGGCAGAGTCAGCTTCAGTCAGGATTTTACTCTCAGCCATGGTGGCTTTGTGTAGAGGAAAATGCCTCTAAATCATCTTCATCAGTATTTAAGATAAATGGTTCAGTCATGAATTCACCATCTGCTAATGAAGGAGCAGATAAACTTGATTTTCATAAGCAAACACAGCCTATGGTTTCACCTTCACTTTCTGCAGTTGGTGGGAATGTCAGCAAAGAGCACCAAAACAACAAATATGCTATGTCCTCTTCACCACATGCCATGGGCAAACACCTGAGTTCAAATTCCCAAGTCGAACTTGTTGGTCATTCGATTGTTTTAACCTCTTACCCTTACTCAGATGCACAGTATGCTGGAATCTTGACATGTCATGGGCCTCAAAATATGATAAATCCTCAGTTGTATGGAATGCACTATGCTAGAATGCCTTTGCCACTTGAGATGGAAGAGGAGCCTGTTTATGTCAATGCAAAGCAGTATCACGGTATCTTAAGGCGAAGGCAGTCACGTGCTAAGGCTGAGCTTGAAAGGAAAGTTATTAAAATTAGAAAGAACATATTATCACTACATTTTTTTTTTCTTTACCAGCCATATCTTCACGAATCTCGTCACCTACATGCTATGAGAAGGGCAAGAGGGTGTGGGGGTCGCTTTCTGAATACGAAGAAGCTTGAAAATAACAATTCCAATGTTGCTCCGGAAAAAGACAAGAACAATGGTTCAAACCCTTTAGCGATGTCTGCCAACACACCTTCCTCTGAGCATTCTCTAATCAACAATGAGATTTTCCGCTCATCAAAGAATCATCATGACATGTCAGTGTCCATGGTCGGGAACATGCACAGTGGAGACTTATTTAGTCAAGAGAGGGGAAGCATGCAGATTCATGGAGCCCGAAATTTGGCTATCAAATGA 1242 0.4195 MSLLRLQTERLRENWSHFNVIEALNPKSSSGTSAAAASQPGLKNSARSIQVYLELNYGKHKTVNSFPFAHIYVTSRRPLANTFIAYSRENLGRMPGKPDAEDRRYEGGGGQSQLQSGFYSQPWWLCVEENASKSSSSVFKINGSVMNSPSANEGADKLDFHKQTQPMVSPSLSAVGGNVSKEHQNNKYAMSSSPHAMGKHLSSNSQVELVGHSIVLTSYPYSDAQYAGILTCHGPQNMINPQLYGMHYARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELERKVIKIRKNILSLHFFFLYQPYLHESRHLHAMRRARGCGGRFLNTKKLENNNSNVAPEKDKNNGSNPLAMSANTPSSEHSLINNEIFRSSKNHHDMSVSMVGNMHSGDLFSQERGSMQIHGARNLAIK 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g1215 413 ProSitePatterns NF-YA/HAP2 subunit signature. 263 283 IPR018362 GO:0003677|GO:0016602
Lele32g1215 413 MobiDBLite consensus disorder prediction 90 112 - -
Lele32g1215 413 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 260 327 IPR001289 GO:0003700|GO:0006355
Lele32g1215 413 ProSiteProfiles NF-YA/HAP2 family profile. 258 330 IPR001289 GO:0003700|GO:0006355
Lele32g1215 413 SMART cbf3 257 330 IPR001289 GO:0003700|GO:0006355
Lele32g1215 413 Coils Coil 274 294 - -
Lele32g1215 413 Gene3D - 258 332 - -
Lele32g1215 413 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 133 386 IPR001289 GO:0003700|GO:0006355
Lele32g1215 413 MobiDBLite consensus disorder prediction 333 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g1215 Lele-ChrLele32 13109032 13112551 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele32g1215 115 375 CCAAT-HAP2 Transcription Factor Family AT5G12840 37.050 1.59e-37 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Lele32g1215 CBFB_NFYA 4.1e-24 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g1382 29 20536162 20539343 Lele32g1215 32 13109032 13112551 hybridization
Lele30g0175 30 1782052 1785315 Lele32g1215 32 13109032 13112551 hybridization