Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g1206 ATGGAGGAAGTTCAGGAGCCTCAAACTCAACCACTTGGTGAAGAAGATCAAAATGAAATAATTACTGAAAGTTCTGCATTTGTTAAAGGGGAACCTCCACAGGAAGTGAGTAATCCCCCTAAAGTTGACTCAGAGGTTGAAATTCTCCACGAGAATGTTACAAAACAAACAATTAAGGAAGGTCATGGTCAGAAGCCTACCAAATATTCAACATGCTTTTTTCATTACAGGGCATGGACAGAAAGCTCACAGCACAAGTTTGAAGACACATGGGATGAGCAACGACCCATTGAAATGATATTAGGAAAAGAAAAGAAAGAAATGACTGGCTTGGCTATTGGCGTGGCTAGCATGAAAGCTGGAGAGCGTGCCTTACTGCGTGTGGGCTGGGAACTAGGATATGGAAAGGAAGGCAGCTTCTCTTTTCCAAATGTTCCACCTATGGCAGATTTAGTTTATGAAGTTGAGCTCATAGGCTTTGATGAAACAAAAGAAGGGAAACCTCGCAGTGATATGACTGTTGAGGAAAGGATTGGTGCGGCTGATCGTAGAAAGATGGATGGAAATGCTTTGTTTAAAGAGGAGAAATTGGAGGAGGCCATGCAACAGTATGAAATGGCCATCGCATATATGGGAGATGACTTCATGTTCCAGCTGTTCGGGAAGTATAGAGATATGGCTTTGGCTGTTAAGAATCCTTGCCACCTTAACATGGCTGCATGTCTTATTAAGCTGAACCGTTATGACGAAGCCATTGGACAATGTAGCCTTGTATTGAGTGAGGACGAAAACAATGTGAAGGCATTATTTAGACGAGGTAAGGCTAGGGCAGCCCTAGGCCAAACAGATGCTGCCAGGGAGGATTTTCTGAAAGCAAAGAAGCATGCCCCAGAAGATAAAGCAATAGCAAGAGAATTGAGATTGCTTGCAGAACACGACAAGGCTCTTTATCAAAAGCAAAAAGAGATATACAAAGGAATGTTTGGACCAAGGCCTGAACCCAAGCAAAATAATTTTCTGATTCTTATTTGGCAGTGGTTGCTGGCACTATTTCATCGGCTCATTATGTTATTCAAGCGTGAAAGGCAAAAATCTGACTAA 1101 0.4233 MEEVQEPQTQPLGEEDQNEIITESSAFVKGEPPQEVSNPPKVDSEVEILHENVTKQTIKEGHGQKPTKYSTCFFHYRAWTESSQHKFEDTWDEQRPIEMILGKEKKEMTGLAIGVASMKAGERALLRVGWELGYGKEGSFSFPNVPPMADLVYEVELIGFDETKEGKPRSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLIKLNRYDEAIGQCSLVLSEDENNVKALFRRGKARAALGQTDAAREDFLKAKKHAPEDKAIARELRLLAEHDKALYQKQKEIYKGMFGPRPEPKQNNFLILIWQWLLALFHRLIMLFKRERQKSD 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g1206 366 Pfam Tetratricopeptide repeat 267 297 IPR019734 GO:0005515
Lele32g1206 366 SUPERFAMILY TPR-like 173 326 IPR011990 GO:0005515
Lele32g1206 366 FunFam Peptidylprolyl isomerase 166 294 - -
Lele32g1206 366 SMART tpr_5 181 214 IPR019734 GO:0005515
Lele32g1206 366 SMART tpr_5 266 299 IPR019734 GO:0005515
Lele32g1206 366 SMART tpr_5 232 265 IPR019734 GO:0005515
Lele32g1206 366 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 69 161 IPR001179 GO:0003755
Lele32g1206 366 ProSiteProfiles TPR repeat profile. 266 299 IPR019734 GO:0005515
Lele32g1206 366 PANTHER ARYL HYDROCARBON RECEPTOR INTERACTING PROTEIN RELATED 96 336 IPR039663 -
Lele32g1206 366 MobiDBLite consensus disorder prediction 10 24 - -
Lele32g1206 366 SUPERFAMILY FKBP-like 32 160 - -
Lele32g1206 366 Gene3D Tetratricopeptide repeat domain 163 294 IPR011990 GO:0005515
Lele32g1206 366 MobiDBLite consensus disorder prediction 1 43 - -
Lele32g1206 366 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 65 158 IPR001179 GO:0003755
Lele32g1206 366 Gene3D - 37 162 IPR046357 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g1206 Lele-ChrLele32 13039425 13043305 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele32g1206 53 334 Calmodulin-binding Proteins AT5G48570 32.776 5.75e-30 119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g1372 29 20468159 20471976 Lele32g1206 32 13039425 13043305 hybridization
Lele30g0184 30 1846187 1849794 Lele32g1206 32 13039425 13043305 hybridization