Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g1204 ATGAAGAGGTTGAGGTCTAGCGAGGATCTCCATTTGTACGGAGACAAAAATGGCTGCAAGGATTCGAATCTAAATCGATCCTCGTCTTCTTCACATAGAACCTTTTACTACAAACCTGATAATGTGCGGAAGGGATTACTTTCCTCATCGTCTTCGGCGTCTCGGTATGACAGGGATCGAACGATGGATGAGGATCGGGAAGGCTCCCGCTTGGTTCGGAAGCGATCAGACCATGATTTTGATAGTTTTGATCGCAGAAAGGGGTTTGATCGTTACAGGGACACTGGAGATAGTCGAGGGTACGGAGCTGGAGGGGATAAGGGTTTGATTAAGAGGTCGGAGAGTTTTTGTGGGTCTAGGAGGGATTTTCCGAAGGGCTTTCGGTCTGAGAGGGACCGGTCTCGGCGGGAAGGCAGTGTGTCGTCGTGGCGGAGATTTGGCGGTGGGTTAAAGGATTTTGATGATAGTGTCAGGGGTAGCAGGGTTGGACTGGAAGATAGAGTAGTGCGGTCTCCGAGGAATTTGAGGGATGTGAGATCCCCAACATGGTCAAAAGATTCAGAGAGCGAGCATTCTAAGATGAGTGAGCAGTCTAAGATGAGGTCTTCTTCAAGAGGATCTAGAGATGCAAAGTCGAAGTCCAAGTCTCCATCTTGGTCCAAGGATTCAGAGAGTGAACAATCAAGGAGTGAGCAATCGAAGAGTGTTGAGGTGAAGAAAACTGAGGAAGTACAGGTCGAGAGCCGTAGTAGTAGTGAAATGGAAGAAGGAGAGCTGGAGCCAGAACCTATGCCTGAAACAGAACCAGAAAAGGATCGTAATGCTGCACCTAAGAATGAAGACCACCCCTCTATTCCTTTGGAGGCTGATGAGAAGGAAAGCCAGCTCAATGGTACAGATACTACGCATGAAATACCGGAAGCATTAAATAAAGAAGAGGCAAAACCCGAAGAGGAAACCGAGTCAGCAGAACAGAATGTGGAGAAAGATGAAAAGCTGCCAGATGTTAAGAATGATCCAACTCATCAAGTGCACGATACCGAAAATGAAATCGAAACTTCTATTCATAATGATAACAAGGCAGGAGAGAGTTTGAAAGTCGAAATCACATGTGAGGGGGAAACAAAGGAAGGTGCGGAGCAAGGGAAACCATTGATTCATGAAGAGGAACATAAGCAGGAAAATGGCGCAGATCTTGAAACCAGGGCAGACTCTGACAAACCAGAGCCACACAAGGAAGTTTCAACAGAAAATGAAGTGCTTAAAACTGATGGGGAAATGACGACGGAGACTATAACCAACAACGTGAAGGATAAAGGCAAAAGTGTCTCTGTGACTCCTACAGATGTTGTTCACCCTTCTGAAGATGCTTTGTGGAATGACAGAGGATCCAGAGATCTCACAACATACTCTGGCGATGCCAGGGAAGGTCCAAGCACAATGGGCTTTGAGTTATTTTCTAGATCTCCTGTTAGGAAAGCAGAGAAAACTGACCAATCAAGTCTTAGCAAACATAAAGATGAAAGTCTTTCAATGGAGGATCTTGATCTTTCTCTTAGCTTGCCTAATGTTTTGTTACCTATTGGTGCTAATGAGAATACACCAACCCCTGGATCCCCCAGTCAAGCTCGAAGTGTACATTCTTTGAGTACATTTCGTACCAACTCAGAAGGATTTACTGCGTCAATGTCTTTCTCAGGTTCTCAATCTTTTTATCACAATCCAAGCTGTTCTCTCACACAAAATTCGGTCGACTTTGAACAATCTGTCCATAGTCGCCCATTATTTCAGGGAATAGATCAAGTTTCTCATGGAGGCTGGCAAGGTCAGTCTAAGACTGATCCCAAACAGAAAGAAATTCCTTACTGTCAAGGAACTTTGATTAATGGCAGTGGCACTTCTTGTCAGTCTCAAGCAACATGGGGTATTTTGGATGGCCAAGCTGTGAAAGGCCAGCCTTCTAGGGTTGTAGAAGGTCAGCCTTCTAGGGTTCTAGAAAGTAGCTCAAAAATGGCCAGTGGACTTGACAGGCAGTTAAGTTTTCATAAGCAGCTGTCAGGACAGTCAAGGCGCCATGATGATGTTAGATCTCCTTCACAGAGTGTTGGTTCTCATGACATTGGGTCAAGTTATAGTTTTGACAAGAAGAGAGAAATGAGAGACAGGAGCAATGGTAGTTTATATAGAACTGCAAGCTACAAGGAACAAGAACAATTTCAGATGGGTGGAATTGAGTTTGTTGAGACTATCATTGCAAAAATAGTTTCTGAACCAGTGCCTGCAATGGCTAAAAAGTTTCATGAAATGGCTGGACAGACTTCATCTTGCTTGAAAGAGAGCATTCGTGAGATTATGCTTAATGCAGATAAGCGTGGGCAAATACTTGCTTTTCAGAAAGTTCTGCTGAACAGGTCTGATATAACCTTGGAGGTTTTACTAAAGGCCCATCGAGTTCAATTGGAAATTTTGGTTGCTTTGAAAACAGGTTTAACTAATTTTATTCAGTTAGACAACAGCATTTCGTCTACTGATTTAGCTGAGATTTTTCTGAACTTAAGATGTAGGAATCTTTTATGCCGGAGTCAATTGCCTGTGGATGAATGTGATTGTAAAGTTTGTGCACAGAGAAGTGGCTTTTGCAGGGAATGTATGTGCCTTGTGTGTTCAAAGTTTGACAATGCATCAAATACATGTAGTTGGGTTGGGTGTGATGTTTGCCTTCATTGGTGCCATACGGACTGTGGGTTACGTGAATCATATATTAGAAATGGACACAGTGCTACTGGGGTACAAGGGGTAACTGAGATGCAATTTCATTGTATTGCCTGTGATCATGCTTCAGAGATGTTTGGTTTTGTCAAGGAGGTGTTTCTAAATTTTGCAAAAGATTGGTCAGTTGAAGCTCTTAGCAAGGAGCTTGAATATGTGAAGAGAATATTTTCTGCCAGCAAAGACATGAGAGGGAGACAGCTGCACGAGGTTGCTGATCAAATGCTGCTAAGGTTGGCAAATAAGTCTAAACTTCAAGAGGCTTATAGCCACATCATGTCTTTCCTAAATTATGGAGATTCTCCCAAATTAGCCTTGACACAGAACTTTCCTGGGAAGGAACAAATTAAAGAAAAGAATGCAGTTGCTGAGCCCAGCCATGAAGCTGCCTGGATGAAATCTATCTATTCTGAAAAGACGCCTGTGTTGGAACGGCCAGCAAACATCCTTTCAAGCTTGGACCGGAATGATAAACGGACTCCGCCGCAAGAGTTGCAGATGAATGTCCAAAAGGACTATGGTTTTGATGAATTGGAGAGTATAATAAAAATTAAACTGGCAGAGGCTAAAATGTTTCAAACACGTGCGGATGATGCCAGAAGAGAAGCCGAAGGCCTGAAACGCATTGCCTTGGCAAAGAATGAGAAGATTGAAGAAGAGTATGTCAGCCGGCTCTCAAAGTTGCGACTGGCGGAGACTGAGGAAATGCGTAAACAAAAATTTGAAGAACACCAGGCACTGGAAAGAGCGCATCTGGAGTACTTTAACATGCAAATGAGAATGGAAGCAGACATTAAGGATCTGCTATTGAAAATGGAAGCGACGAAAAGGAGTCTTGCCATGTGA 3615 0.4354 MKRLRSSEDLHLYGDKNGCKDSNLNRSSSSSHRTFYYKPDNVRKGLLSSSSSASRYDRDRTMDEDREGSRLVRKRSDHDFDSFDRRKGFDRYRDTGDSRGYGAGGDKGLIKRSESFCGSRRDFPKGFRSERDRSRREGSVSSWRRFGGGLKDFDDSVRGSRVGLEDRVVRSPRNLRDVRSPTWSKDSESEHSKMSEQSKMRSSSRGSRDAKSKSKSPSWSKDSESEQSRSEQSKSVEVKKTEEVQVESRSSSEMEEGELEPEPMPETEPEKDRNAAPKNEDHPSIPLEADEKESQLNGTDTTHEIPEALNKEEAKPEEETESAEQNVEKDEKLPDVKNDPTHQVHDTENEIETSIHNDNKAGESLKVEITCEGETKEGAEQGKPLIHEEEHKQENGADLETRADSDKPEPHKEVSTENEVLKTDGEMTTETITNNVKDKGKSVSVTPTDVVHPSEDALWNDRGSRDLTTYSGDAREGPSTMGFELFSRSPVRKAEKTDQSSLSKHKDESLSMEDLDLSLSLPNVLLPIGANENTPTPGSPSQARSVHSLSTFRTNSEGFTASMSFSGSQSFYHNPSCSLTQNSVDFEQSVHSRPLFQGIDQVSHGGWQGQSKTDPKQKEIPYCQGTLINGSGTSCQSQATWGILDGQAVKGQPSRVVEGQPSRVLESSSKMASGLDRQLSFHKQLSGQSRRHDDVRSPSQSVGSHDIGSSYSFDKKREMRDRSNGSLYRTASYKEQEQFQMGGIEFVETIIAKIVSEPVPAMAKKFHEMAGQTSSCLKESIREIMLNADKRGQILAFQKVLLNRSDITLEVLLKAHRVQLEILVALKTGLTNFIQLDNSISSTDLAEIFLNLRCRNLLCRSQLPVDECDCKVCAQRSGFCRECMCLVCSKFDNASNTCSWVGCDVCLHWCHTDCGLRESYIRNGHSATGVQGVTEMQFHCIACDHASEMFGFVKEVFLNFAKDWSVEALSKELEYVKRIFSASKDMRGRQLHEVADQMLLRLANKSKLQEAYSHIMSFLNYGDSPKLALTQNFPGKEQIKEKNAVAEPSHEAAWMKSIYSEKTPVLERPANILSSLDRNDKRTPPQELQMNVQKDYGFDELESIIKIKLAEAKMFQTRADDARREAEGLKRIALAKNEKIEEEYVSRLSKLRLAETEEMRKQKFEEHQALERAHLEYFNMQMRMEADIKDLLLKMEATKRSLAM 1204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g1204 1204 Pfam Coiled-coil region of Oberon 1077 1192 IPR032535 -
Lele32g1204 1204 MobiDBLite consensus disorder prediction 305 424 - -
Lele32g1204 1204 MobiDBLite consensus disorder prediction 56 97 - -
Lele32g1204 1204 MobiDBLite consensus disorder prediction 113 140 - -
Lele32g1204 1204 CDD PHD_OBE1_like 884 943 - -
Lele32g1204 1204 MobiDBLite consensus disorder prediction 651 671 - -
Lele32g1204 1204 MobiDBLite consensus disorder prediction 20 36 - -
Lele32g1204 1204 Coils Coil 1153 1173 - -
Lele32g1204 1204 MobiDBLite consensus disorder prediction 264 298 - -
Lele32g1204 1204 MobiDBLite consensus disorder prediction 425 442 - -
Lele32g1204 1204 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 1202 IPR004082 -
Lele32g1204 1204 MobiDBLite consensus disorder prediction 148 256 - -
Lele32g1204 1204 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 819 834 IPR004082 -
Lele32g1204 1204 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 845 866 IPR004082 -
Lele32g1204 1204 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 964 983 IPR004082 -
Lele32g1204 1204 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 891 911 IPR004082 -
Lele32g1204 1204 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 804 819 IPR004082 -
Lele32g1204 1204 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1099 1119 IPR004082 -
Lele32g1204 1204 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 765 787 IPR004082 -
Lele32g1204 1204 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1138 1160 IPR004082 -
Lele32g1204 1204 MobiDBLite consensus disorder prediction 1 16 - -
Lele32g1204 1204 MobiDBLite consensus disorder prediction 489 511 - -
Lele32g1204 1204 MobiDBLite consensus disorder prediction 528 549 - -
Lele32g1204 1204 MobiDBLite consensus disorder prediction 683 719 - -
Lele32g1204 1204 MobiDBLite consensus disorder prediction 1 511 - -
Lele32g1204 1204 Coils Coil 1123 1143 - -
Lele32g1204 1204 Pfam PHD - plant homeodomain finger protein 854 977 IPR032881 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g1204 Lele-ChrLele32 13023774 13028429 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele32g1204 854 1002 PHD Gene Family AT5G57380 26.846 1.91e-11 66.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g1370 29 20451084 20455606 Lele32g1204 32 13023774 13028429 hybridization
Lele30g0186 30 1864891 1869541 Lele32g1204 32 13023774 13028429 hybridization