Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g1178 ATGGCAAAGAGGAAGAAGAGCTGGTTTAGTTTTGTGAAGAGGCTCTTTGTGTGGGACGCAGAGTCCAGTTCCAAACCAGAGAAGAAAGAGAAAAGAAGGAAATGGATGTTTGGAATTGGAAGGCTAAAGATAAAGAGATTCCCTTCTATTACAGCTCCACCGGCAACACAAAAAGAAACAAAACAAGAGGTTGAAAAGTTTAACAATGGCAATATATATCACGAAGAAACTGAAGAATTACAAGTCGTTGTTAAGTCCAGCATTGAGGCTCCTCAACCCACATTACAATGCCAGAGGAAGATTCAAGAATCTTCAGCCATAAAAATTCAAACTACGTTTCGGGGTTACCTTGCTAGGAAGGCTCTAACTGCATTGAAGGGAATAGTGAAGCTACAAGCTATCATTAGAGGCAGAGCAGTAAGAAGGCAAACTATGAGCACTCTGAAGTGCTTGCAGTCACTTGTTGATATTCAGTCACAGGTCTGTGCCAAGAGACTCCAAATGGTTAAAGTTAGATGGGATTATGATGAGAACCAAGATATTCCAAGTTCAAGAGACAAGATAATAAGGATGGATTCAAACAGTGAAAGGAGGTGGGATGACAGTATTTTGTTGAAGGAAGAGACAGATGCTTCTTACATGAGCAAGAAAGAAGCAGAAGTCAAGAGAGAACGAGTGAAAGAATACTCTTTCAACCATCGAAGATCAGCAGAATCAGATAGAAAGAAAGTAAACGGAAGATGGAAGTATTGGATGGAGCAGTGGGTGGATACCCAGCTTTCCAAAAGCAAAGAACTTGAAGATTTAGATTCAGTTTTCAGTTCATATTACAGAGCAGCAGGGGAAGAAGATGGAGGAGGAGGAGTAAGACAGCTCAATGTGAGAAATATTCAAAGTCAAAGACAAAATCAGATTATTGAAGGCCTATATTCTCCAAAACTTGCTCCAATAAGAAAACCCTCTCCTCACAGAAGGCAACATTCTCTGGGAAATGATGAGCCTTCAAGCTCTTCTGTAATACTTCCAACATACATGGCAGCAACAGAATCAGCGAGAGCAAAAGCAAGATCTTCAAGCTCCCCAAAACTAAGAACTGTGAATGTTGTGGATACAACAAAACTAGATGGGAACTCACCATGCAAAAAGAAGCTATCTTTTGTATCTTCTTCCATTAACCAGCAGAGATCTCCAAGTTTAAAGGGAGTCTCAGGACCTATAAGATCAAGCAGGACAATGAAGGATCTCAGCATTAACTCAGATAGCTCATTTCTGTACGGTTACAACAGAGATTGGGATGGACAAGGTATCTTCAAATGA 1317 0.4039 MAKRKKSWFSFVKRLFVWDAESSSKPEKKEKRRKWMFGIGRLKIKRFPSITAPPATQKETKQEVEKFNNGNIYHEETEELQVVVKSSIEAPQPTLQCQRKIQESSAIKIQTTFRGYLARKALTALKGIVKLQAIIRGRAVRRQTMSTLKCLQSLVDIQSQVCAKRLQMVKVRWDYDENQDIPSSRDKIIRMDSNSERRWDDSILLKEETDASYMSKKEAEVKRERVKEYSFNHRRSAESDRKKVNGRWKYWMEQWVDTQLSKSKELEDLDSVFSSYYRAAGEEDGGGGVRQLNVRNIQSQRQNQIIEGLYSPKLAPIRKPSPHRRQHSLGNDEPSSSSVILPTYMAATESARAKARSSSSPKLRTVNVVDTTKLDGNSPCKKKLSFVSSSINQQRSPSLKGVSGPIRSSRTMKDLSINSDSSFLYGYNRDWDGQGIFK 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g1178 438 PANTHER IQ-DOMAIN 5-RELATED 1 387 - -
Lele32g1178 438 Pfam IQ calmodulin-binding motif 104 121 IPR000048 GO:0005515
Lele32g1178 438 ProSiteProfiles IQ motif profile. 126 153 IPR000048 GO:0005515
Lele32g1178 438 ProSiteProfiles IQ motif profile. 102 130 IPR000048 GO:0005515
Lele32g1178 438 Pfam Protein of unknown function (DUF4005) 327 395 IPR025064 -
Lele32g1178 438 SMART iq_5 101 123 IPR000048 GO:0005515
Lele32g1178 438 MobiDBLite consensus disorder prediction 310 338 - -
Lele32g1178 438 Gene3D - 99 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g1178 Lele-ChrLele32 12132997 12137074 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele32g1178 1 423 IQD Protein Family AT5G13460 44.754 1.28e-101 308
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g1341 29 20050101 20053509 Lele32g1178 32 12132997 12137074 hybridization
Lele30g0210 30 2486020 2489107 Lele32g1178 32 12132997 12137074 hybridization