Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g1158 ATGTTCCAGGCACGCTTCTGGGTTTTTCCTCGTTTTCGTTTTCGTTTGGTGCTTGATGAGTCTTTCTCTGATTTCCCGTGGTTACGAATAGTGACCATGATTCATTTCGCACATAAATTTCATATAGCGCTTGAGTCGGCCTTGGTTTTTCCAAATGGTATTTACATTGTTGTGATGGTACCCTCACCTGTTTTTATTAACCTCTATAATGATGTGTTGCGATTCACATGTCTTGTGTCATCACAATTAGAAAATGATTTCTTTTGCTTTTCTTGTGAAAATATTTTTGCTTGGAAGCATAAACACGTTGACAGAATATGCTACTTGCTTTTGCCTTGTGATGAATGTTGTTTCGCTTGACTGGTGGTTGTTTGTACTAGCATGGCTTCTAGCAATCTATTCTTTGATGATATACGGAGCAAATCTGAGGTTGATCCTGCTTCAAATGAGGAGCCAATGGACATCAGTGAGCTAGTGAATGATCCTGCACAAACTGCGCTAAAATCTAATGTGGCTGTTACAAGCAGTGTTCATGAACTTTTAGAGTGTCCCGTGTGCTTGAATGCCATGTACCCTCCAATCCACCAGTGTTCAAATGGCCATACTTTGTGCTCAAGTTGCAAACCCAGGGTCCACAACCGGTGTCCTACCTGTAGACATGAGCTTGGCAATATTAGATGCTTGGCATTGGAGAAGGTAGCTGCGTCTTTGGAACTTCCTTGTAAATACCAGGCTTTTGGGTGCATGGGCATATATCCGTATTACTGCAAGTTGAAGCATGAATCTCAATGTGCATATAGACCATATAACTGTCCATATGCTGGTTCAGAATGCACTGTCATTGGCGATATTCCTTTTCTGGTGGCTCATTTGAAAGATGATCACAAAGTGGACATGCATAATGGGAGCACTTTTAATCATCGTTATGTCAAATCAAACCCCCAAGAAGTTGAAAATGCCACATGGATGCTTACGGTCTTCAGCTGCTTTGGTCAATATTTTTGTCTACACTTTGAAGCTTTTCAGCTGGGTATGGCTCCAGTCTACATAGCCTTCTTGCGATTCATGGGTGATGATAATGAGGCAAAGAACTATAGCTACAGTCTCGAGGTTGGTGGTAATGGGAGGAAGATGACTTGGCAGGGTGTGCCTAGAAGCATCAGGGACAGCCACCGCAAGGTTCGTGACAGTTTTGACGGTCTTATCATCCAAAGGAACATGGCTCTCTTCTTTTCCGGGGGAGACAGGAAGGAATTGAAGCTAAGGGTTACAGGGAGAATTTGGAAAGAACAGTGA 1296 0.4267 MFQARFWVFPRFRFRLVLDESFSDFPWLRIVTMIHFAHKFHIALESALVFPNGIYIVVMVPSPVFINLYNDVLRFTCLVSSQLENDFFCFSCENIFAWKHKHVDRICYLLLPCDECCFAXLVVVCTSMASSNLFFDDIRSKSEVDPASNEEPMDISELVNDPAQTALKSNVAVTSSVHELLECPVCLNAMYPPIHQCSNGHTLCSSCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQAFGCMGIYPYYCKLKHESQCAYRPYNCPYAGSECTVIGDIPFLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKMTWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g1158 431 CDD Sina 297 425 - -
Lele32g1158 431 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 236 291 IPR013083 -
Lele32g1158 431 ProSiteProfiles Zinc finger RING-type profile. 183 219 IPR001841 -
Lele32g1158 431 FunFam E3 ubiquitin-protein ligase SINAT5-like 292 424 - -
Lele32g1158 431 SUPERFAMILY TRAF domain-like 236 428 - -
Lele32g1158 431 Pfam Seven in absentia protein family 225 424 IPR018121 GO:0005737|GO:0006511|GO:0007275
Lele32g1158 431 CDD RING-HC_SIAHs 181 219 - -
Lele32g1158 431 FunFam E3 ubiquitin-protein ligase SINAT5-like 141 234 - -
Lele32g1158 431 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 163 430 - -
Lele32g1158 431 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 235 IPR013083 -
Lele32g1158 431 SUPERFAMILY RING/U-box 177 224 - -
Lele32g1158 431 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 292 424 IPR008974 GO:0005515
Lele32g1158 431 ProSiteProfiles Zinc finger SIAH-type profile. 236 296 IPR013010 GO:0008270
Lele32g1158 431 FunFam E3 ubiquitin-protein ligase SINAT3 235 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g1158 Lele-ChrLele32 11815171 11819388 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele32g1158 174 431 C3H Transcription Factor Family AT2G41980 79.457 4.13e-159 449