Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g1150 ATGGTTGTTCTTCAAAATCCCACCCAGTTCATCCTAAGCCTATGCGCAATCGTTTGGAAGGGTCATTGGAGCAATCTGTTGAAGCTGGAGAAGCCTTCTGCTCTCACTTCTTCCACCATTCAGCAGGTACTTCTGCAACTCTCTCTCCATGCCTTTCCTCCATCTCATTCCTTCTCATTCTTCAAATGGGTCGAGACAATTCCAAATTATAAGCACTCTTTGCAATGTTCATGGTCCATGCTTCATATCCTCGTAAAGCATACACATTTCCGAACTGCACAAGAGATGCTTGAGAAAATTGCCCACAGGGATTTTCTTTCGTCGCCATCAGTTTTGAGAACTTTGATTGAAAATCAACATGAACCAGAAGTGAATTCGCATATATTGAGCTGGCTTGTAATACATAATGCAAAATCAAAGATGACCGATGATGCCATTCAGGTTTTTGAGCAGATGAGGTTATATAAATTGAATCCTCATTTGCATGCCTGTACTGTGCTTCTGAATTCTTTGGTCAAGGATGGGGTTACCAACATGGTATGGAAGGTTTACAAACAAATGGTTAAAGCTGGTGTTTTTCCTAATATACATATGTATAATGTGTTAATGTATGCTTGTTCCAAATCAGGAGATGTAGAGAGGGCAGAACATTTACTGAATGAGATGGAAATGAAGGGTGTGTTTCCTGATATTTTCACTTATAATACTTTGATATCATTATATTGCAAGAGAAGTAGGCACTACGAGGCTTTATCTATCCAGGAGAGAATGGAAAGAGAAGGAATAAATCTTGACATTGTTAGTTACAATTCTCTTATTTATGGATTTTGTAGGGAGGGTAAGATGAGATACGCCATGAGGATATTCAGCAACATCAAAGATTCAATTCCTAATAATGTTACATACACTACATTGATTGATGGGTATTGTAAAACAAATGACCTGGAGCAAGCTCTGAAATTGTGTGAGATGATGCAGGCTAAGGGATTGTACCCTGGAGTTGTTACTTATAATTCAATTTTGCGTAAGCTGTGTCAAGATGGAAAAATAAGAGAGGCAAATAAACTCTTGACTGAGATGAGTGAAAGAAAAATTCAGCCTGATAATGTCACATGTAACACATTGATTAATGCTTATTGCAAGATAGGAGATATGAAATCTGCATTGAAATTTAAGAACAAGATGTTAGAGGCTGGATTGAAACCTGACCCATTTACATATAAAGCATTAATTCATGGGTTCTGCAAGATAAAAGAACTGGAAAGAGCTAAGGATATGTTGTTTTCCTTACTTGATGCTGGGTTTTACCCCAATTATTACACTTATTCATGGATCGTTGATGGTTACTGCAATAAAGACAATGAAGATGCACTTGTTACACTCCCTGATGAGTTTCTTAGAAGAGGTCTTTGTATTGATGTTTCAATAAACAGGGATTTAATCAGAAGGTTATTTAAGTTAGAAAGGATACAATGTGCTATGAAGTTATTTAATCTTATGGAAGGGAGGGGTATATCAGGTGACAGCGTTGTCTACACAAGTCTTGCTTATGCTCATTGGAAATTAGGGAATGCAATGTTTGCGTCAAATATATTAGAAGAGATGACCAGAAGGAGGTTGATGATAACAAGCAAAATCTATAAATGTTTTGGTAATCCTCTTGGTAGTGAAAACCACACTTCATTCTGGAATTATGTAGTGGAAAGGGGCCTTATGCCAAGAAATACAATGAATAAAATAAAGCAGATGGAATTATGA 1758 0.3697 MVVLQNPTQFILSLCAIVWKGHWSNLLKLEKPSALTSSTIQQVLLQLSLHAFPPSHSFSFFKWVETIPNYKHSLQCSWSMLHILVKHTHFRTAQEMLEKIAHRDFLSSPSVLRTLIENQHEPEVNSHILSWLVIHNAKSKMTDDAIQVFEQMRLYKLNPHLHACTVLLNSLVKDGVTNMVWKVYKQMVKAGVFPNIHMYNVLMYACSKSGDVERAEHLLNEMEMKGVFPDIFTYNTLISLYCKRSRHYEALSIQERMEREGINLDIVSYNSLIYGFCREGKMRYAMRIFSNIKDSIPNNVTYTTLIDGYCKTNDLEQALKLCEMMQAKGLYPGVVTYNSILRKLCQDGKIREANKLLTEMSERKIQPDNVTCNTLINAYCKIGDMKSALKFKNKMLEAGLKPDPFTYKALIHGFCKIKELERAKDMLFSLLDAGFYPNYYTYSWIVDGYCNKDNEDALVTLPDEFLRRGLCIDVSINRDLIRRLFKLERIQCAMKLFNLMEGRGISGDSVVYTSLAYAHWKLGNAMFASNILEEMTRRRLMITSKIYKCFGNPLGSENHTSFWNYVVERGLMPRNTMNKIKQMEL 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g1150 585 Gene3D Tetratricopeptide repeat domain 245 362 IPR011990 GO:0005515
Lele32g1150 585 Pfam PPR repeat 510 539 IPR002885 -
Lele32g1150 585 Pfam PPR repeat 480 505 IPR002885 -
Lele32g1150 585 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 230 264 IPR002885 -
Lele32g1150 585 Gene3D Tetratricopeptide repeat domain 458 570 IPR011990 GO:0005515
Lele32g1150 585 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 403 437 IPR002885 -
Lele32g1150 585 Gene3D Tetratricopeptide repeat domain 107 244 IPR011990 GO:0005515
Lele32g1150 585 Gene3D Tetratricopeptide repeat domain 363 431 IPR011990 GO:0005515
Lele32g1150 585 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 298 332 IPR002885 -
Lele32g1150 585 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 265 295 IPR002885 -
Lele32g1150 585 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 368 402 IPR002885 -
Lele32g1150 585 SUPERFAMILY HCP-like 297 457 - -
Lele32g1150 585 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 160 194 IPR002885 -
Lele32g1150 585 TIGRFAM PPR: pentatricopeptide repeat domain 335 368 IPR002885 -
Lele32g1150 585 TIGRFAM PPR: pentatricopeptide repeat domain 198 231 IPR002885 -
Lele32g1150 585 TIGRFAM PPR: pentatricopeptide repeat domain 300 333 IPR002885 -
Lele32g1150 585 TIGRFAM PPR: pentatricopeptide repeat domain 232 265 IPR002885 -
Lele32g1150 585 TIGRFAM PPR: pentatricopeptide repeat domain 267 293 IPR002885 -
Lele32g1150 585 TIGRFAM PPR: pentatricopeptide repeat domain 405 438 IPR002885 -
Lele32g1150 585 TIGRFAM PPR: pentatricopeptide repeat domain 370 403 IPR002885 -
Lele32g1150 585 TIGRFAM PPR: pentatricopeptide repeat domain 163 196 IPR002885 -
Lele32g1150 585 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 480 541 - -
Lele32g1150 585 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 195 229 IPR002885 -
Lele32g1150 585 Pfam Pentacotripeptide-repeat region of PRORP 137 296 IPR033443 -
Lele32g1150 585 Pfam PPR repeat family 367 416 IPR002885 -
Lele32g1150 585 Pfam PPR repeat family 297 345 IPR002885 -
Lele32g1150 585 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 333 367 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g1150 Lele-ChrLele32 11661303 11663060 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele32g1150 59 576 Glycosyltransferase AT1G05670 29.644 8.37e-68 232
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g1305 29 19622438 19625730 Lele32g1150 32 11661303 11663060 hybridization
Lele30g0230 30 2837703 2839223 Lele32g1150 32 11661303 11663060 hybridization