Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g1149 ATGGGCCGGATTCGGACATTCGGGGAAAATCCACTTGCTCGTCTTGTTGCACTCGTAGCTTTTCCTTTCAACTTTCTTTCTTCTGTTGATACTTCCGGCAATTGTTCAGAAAGTTTTCGTCTCCTCGTTACAGTTGCTTTGATTTCTGATCCTGCTGGCATTTTCTCCCAATCAATTTCTAGTGCCGCCGGTGAAGAAGCTGCGCGTGCTGCAGAGAGAGTCTTTAATCAGGCATTGAAGAAATTGCCCTCTCAGTCTCCTCCTCCGGATGAGATACCTGCTAGTACAACCCTTATCAAAGTCATTCGTAGAGCACAAGCATCACAAAAGTCACATGGAGACACGCATTTAGCTGTTGACCAATTGGTTCTGGGTCTTCTTGAAGATTCCCAGATTGGCGACTTGCTGAAAGAAGCTGGAGTTGTTACAGCAAGAGTGAAATCAGAGGTAGAGAAGCTTCGTGGCAAGGAAGGGAAAAAGGTTGAGAGTGCTTCTGGGGATACAACATTGCAAGCATTGAAGACTTATGGGCGGGACCTCGTTGAGCAAGCAGGTAAACTTGATCCCGTCATCGGACGCGATGAGGAAATCCGAAGGGTGGTGAGGATTTTATCAAGAAGGACGAAGAACAACCCGGTTCTCATAGGAGAGCCAGGAGTTGGTAAAACAGCCGTAGTAGAAGGTTTGGCACAGAGGATAGTTAGACGGGATGTGCCTAGTAATCTTGCTGATGTGAGGCTTATTGCATTGGACATGGGTGCTCTAGTGGCAGGGCGTCATCTTCCGGACAAAGCAATTGACTTAGTGGATGAGGCATGTGCTAATGTGAGAGTTCAACTTGATAGTCAGCCTGAGGAAATTGATAACCTTGAAAGGAAGAGAATGCAGTTAGAAGTGGAACTCCACGCACTTGAGAAAGAAAAAGACAAGGCTAGCAAAGCACGTCTTGTAGAAGTATGTGGTGTGCGAAAGGAGCTTGATGATTTAAGGGATAAACTTCAACCTTTGATGATGAAGTATAGAAAAGAGAAGGAAAGGATTGATGAACTTCGTAGGCTCAAGCAGAAACGAGAGGAGCTCATGTTTGCCTTAGAGGAGGCTGAGAGGCGATATGATCTAGCTAGAGCTGCGGATCTGCGATATGGGGCAATTCAGGAGGTGGAATCAGCAATACAACAGTTAGAAGGACATGCTGGTGAGAATTTGATGTTGACAGAAGTTGTTGGACCAGATCAAATAGCTGAGGTAGTGAGTCGTTGGACCGGTATACCAGTGACGAGGCTTGGCCAGAATGAGAAAGAAAGGTTAATAGGACTTGGTGAAAGATTGCACCAAAGAGTGGTGGGACAAGATAAAGCAGTGAGAAGGCATTTTAGGCCAGAATTGTTGAACCGACTCGATGAAATTGTGGTATTTGATCCTCTTTCACATGATCAACTGAGGAAGGTTGCGAGGTTACAAATGAAGGATGTTGCAGTACGTCTTGCTGAGAGAGGAGTTGCTATGGCAGTGACAGACGCAGCATTGGATTTCATACTGGCAGAGAGCTATAATCCGGTTTATGGAGCTAGACCAATCAGGAGATGGATTGAGAGGAAGGTGGTGACAGAGTTGTCAAGGATGCTTGTGAGGGAAGAAATCGATGAGAACTCAACGGTTTATATAGATGCTGGGCCTAAGGGCAACTCGTTGGCATACCAAGTGGAGAAGAATGGAGGATTGGTTAATGAGGCTACTGGGCAGAAATCAGATATCTTGATTCAGATCCCAAATGGATTTAAGAGTGATGCTGCTCAAGCAGTGAAGAAGATGAAGTTCGAGGAAATTGATGATGATGAAGATGCTGAGATGGAAGAGACCCAGTTTCATGTTTTGGCTGTTGATGACAGTATCATTGACAGAATGTTGATTGAGAGGCTCCTCAAAACCTCATCCTTTCAAGTTACTGCAGTGGATTCTGGAAGCAAGGCTTTGAAATTTCTTGGTTTAAATGAAGATGAACAGAGAGAAGCTTCTAATTGCCATCAGGACTTGGAAGTAAACCTCATCATAACAGATTACTTTATGCCAGGAATGACAGGCTATGATCTACTGAGAAAAATCAAGATGCTTAGAAGAAGGAGCTCAAGAATTTTTTCTGAAACCTGTTCAACAGTCAGATGTAAACAAGCTCAAGCCACATTTGACGAAATCAAAGTGTTAAGGAAGAGGAAGACCGATTCATCAAATAACAAAAGGAAGGACATGGAAGAAGAAACCCATTCACCAGAGAAAACCACAGCAAAAATACAGCAGTTAGAGGTGTTTTCCAATTAA 2316 0.4413 MGRIRTFGENPLARLVALVAFPFNFLSSVDTSGNCSESFRLLVTVALISDPAGIFSQSISSAAGEEAARAAERVFNQALKKLPSQSPPPDEIPASTTLIKVIRRAQASQKSHGDTHLAVDQLVLGLLEDSQIGDLLKEAGVVTARVKSEVEKLRGKEGKKVESASGDTTLQALKTYGRDLVEQAGKLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRRDVPSNLADVRLIALDMGALVAGRHLPDKAIDLVDEACANVRVQLDSQPEEIDNLERKRMQLEVELHALEKEKDKASKARLVEVCGVRKELDDLRDKLQPLMMKYRKEKERIDELRRLKQKREELMFALEEAERRYDLARAADLRYGAIQEVESAIQQLEGHAGENLMLTEVVGPDQIAEVVSRWTGIPVTRLGQNEKERLIGLGERLHQRVVGQDKAVRRHFRPELLNRLDEIVVFDPLSHDQLRKVARLQMKDVAVRLAERGVAMAVTDAALDFILAESYNPVYGARPIRRWIERKVVTELSRMLVREEIDENSTVYIDAGPKGNSLAYQVEKNGGLVNEATGQKSDILIQIPNGFKSDAAQAVKKMKFEEIDDDEDAEMEETQFHVLAVDDSIIDRMLIERLLKTSSFQVTAVDSGSKALKFLGLNEDEQREASNCHQDLEVNLIITDYFMPGMTGYDLLRKIKMLRRRSSRIFSETCSTVRCKQAQATFDEIKVLRKRKTDSSNNKRKDMEEETHSPEKTTAKIQQLEVFSN 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g1149 771 ProSiteProfiles Clp repeat (R) domain profile. 46 156 IPR004176 -
Lele32g1149 771 SMART ClpB_D2_small_2 475 566 IPR019489 -
Lele32g1149 771 SUPERFAMILY Double Clp-N motif 45 166 IPR036628 -
Lele32g1149 771 MobiDBLite consensus disorder prediction 737 758 - -
Lele32g1149 771 Coils Coil 280 314 - -
Lele32g1149 771 FunFam ATP-dependent chaperone ClpB 248 421 - -
Lele32g1149 771 Pfam C-terminal, D2-small domain, of ClpB protein 475 555 IPR019489 -
Lele32g1149 771 Pfam Clp amino terminal domain, pathogenicity island component 105 155 IPR004176 -
Lele32g1149 771 Pfam AAA ATPase domain 190 344 IPR041664 -
Lele32g1149 771 Gene3D - 39 157 IPR036628 -
Lele32g1149 771 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 258 422 IPR027417 -
Lele32g1149 771 Gene3D - 599 733 - -
Lele32g1149 771 MobiDBLite consensus disorder prediction 737 771 - -
Lele32g1149 771 SUPERFAMILY CheY-like 621 705 IPR011006 -
Lele32g1149 771 Coils Coil 340 377 - -
Lele32g1149 771 PANTHER ATP-DEPENDENT CLP PROTEASE 77 259 - -
Lele32g1149 771 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 546 IPR027417 -
Lele32g1149 771 Gene3D - 179 254 IPR027417 -
Lele32g1149 771 ProSiteProfiles Response regulatory domain profile. 623 771 IPR001789 GO:0000160
Lele32g1149 771 Gene3D - 255 421 IPR027417 -
Lele32g1149 771 CDD AAA 191 258 - -
Lele32g1149 771 Pfam AAA lid domain 256 316 IPR041546 -
Lele32g1149 771 Pfam Response regulator receiver domain 624 711 IPR001789 GO:0000160
Lele32g1149 771 SMART REC_2 622 737 IPR001789 GO:0000160
Lele32g1149 771 Gene3D - 475 575 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g1149 Lele-ChrLele32 11653301 11660440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele32g1149 619 702 Response Regulator Gene Family AT2G41310 64.045 4.06e-31 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele32g1149 AAA_16 1.1e-08 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g1304 29 19620622 19621717 Lele32g1149 32 11653301 11660440 hybridization
Lele30g0231 30 2840091 2848632 Lele32g1149 32 11653301 11660440 hybridization