Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g1146 ATGGCGACCTCCCATTCCAGGGAATCTCGTAACGGCGAGAATTTTGGCGGTAAAAACAACCTGACCCCATGTCGTGTCGCATTACCATTGGCTCTTGATGCATGCATTGGATTAACTAGGGTTTCCATGAGTCCCCCTGCTGAGGAGAAGATGGAAGATGGTAAGCCATTTACTACCTCGGCCGACAGCTCACAGGTCCATGGCGAACATGGTGACCCTGCTGACTCTCGTTTCACTGAATTATGCAAGAATGGGTTATCATTGGATGATAGAAGTTGCAGACAAGCAATGAAGCTGTTCACAGAAACCAAACACCTTCTACAGACCAATATGTCATCTCTTGGGAATGGAACGAGATTGGCTGATAAGCATATAGACGGTGAGAAGAAAGTGATCGATAGCAATGGACTTACCCTGTGCCAGATATTGAGAAAGGAAAAGCTAAACATTGTGGACTTTTTCAAAGAACTTCCTCAGTTTCTTGTTAAGGGTGGTCCAATTTTAAGTAATATATATGGCGCAGATTGGGAAAACAGGCTTGAGGCGAAGGAGCTGCATGCAAACTTTCTTCACTTAAGCATTCTTAGCAAGTATTATAAACGTGTATTCGAGGAGTTCTTCTTGGCAAATGATGCTATTGAAAAAAATTCAGCTGTTTCCGTGACTGGTGATTGTGCATCTCAATATCATCGATTTGGATGGTTGGTTTTTTTGGCTCTTCGTGTCCATGCTTTCAGCCGATTTAAAGACTTGGTGACTTGCACCAATGGTTTAGTTTCTATATTGGCTATCTTGATTATTCACATTCCTGCCCGCTTCAGAAATTTTAACATTCATGACGCATCACGCTTTGTTAAGAAAAGTAGCAAAGGTGTGGACATCATTGCATCACTTTGCAACATCTATGACACTTCAGAAGATGATGTGAGAAAAACTATGGAGAAAGCCAATAATTTAATTGCTGATATACTGAAGAAGAAGCCTTGTCTGGCATCTGAATTTGAAACTGCAACACTTGAGAATATTGACAAAGATGGCTTGTTCTACTTTAATGATCTTATGGAAGAATCATCTCTGCCATCTTGTTTAAACATCTTAGAAAAAGATTATGATGATGCCATTCGTAACAAGGGTGAACTGGATGAGAGGTTGTTTATCAATGAGGAGGACAGCCTGTTAGCTTCAGGAAGCTTGTCTGGAGGTTCCATGTCCACAAGTGGTGTCAAGAGGAAATTTGATTCAATGGCGTCACCTGCAAAGACAATTACAAGTCCACTCTCTCCCCAACGCTCTCCTGCATCTCATCATGCAAATGGCATTTCAATTAGCGCAAGTTCAAAGATGGCAGCCACTCCTGTAACCACTGCTATGACTACTGCTAAGTGGCTTCGTAATGTCATATGTACACTTCCATCAAAACCTTCGCCGGAGCTGGAGAAATTTCTGGCATCATGTGATAGGGATGTCACAAATGATGTAGTGCGCAGGGCACAGATTATATTGCAGGCTATATTTCCTACTAGTCCTTTAGGAGAGCGATGTTTAACTGGAACCCTGCAAAGTGCAAACCTGATGGACAATGTTTGGGCAGAACAACGGAGACTGGAAGCCATGAAGTTATATTATAGGGTTTTGGAGGCAATGTGCAGAGCAGAGGCCCAAATACTGCATGCAACCAATTTAACCTCATTATTAACTAATGAGAGGTTCCATAGATGCATGCTTGCATGTTCTGCAGAATTAGTGCTGGCAACACATAAGACTGTAACAATGTTGTTTCCTGCAGTGCTGGAAAGGACTGGAATTACAGCTTTTGACCTTAGCAAGGTGATAGAAAGCTTTATAAGACATGAAGATTCTCTCCCCAGAGAATTGAGGCGACATCTGAATTCATTGGAGGAGCGGCTTTTGGAGAGTATGGTATGGGAAAAGGGTTCCTCAATGTATAATTCTTTGACAGTTGCCAGACCTTCCCTCTCTTCAGAAATAACACGACTTGGCTTGTTAGCTGAACCAATGCCATCATTAGATGCAATTGCGACACAAATTAACTTCTGTTGTGGGGGGCTGCCCACTGGGCCTTCCTTACAGAAGCCTGAGACTTTACCAAGTCAAAATGGGGATATTAGGTCCCCAAAACGACTTTGCAAAGAATATCAAAGTGTACTAGCAGAACGAAATTCCTTTACCTCACCAGTGAAGGATCGACTTCCCTCAAGTAACATTAAGTCAAAGCTACCCCCTCCTTTGCAGTCAGCTTTTGCAAGTCCAACAAGGCCAAATCCAGGAGGTGGAGGGGAGACTTGTGCAGAAACAGGGATCAATATCTTTTTTGGAAAGATTGTTAAGTTGGCGGCTGTCAGAATAAGTGGCATGGTTGAAAGGCTCCAGTTGTCTCAACAAATAAGAGAGAACGTGTACTGTCTTTTTCAAAAAATACTAAATCAAAGGACATCAATTTTCTTCAACCGCCATATTGACCAAATCATTCTCTGTTGTTTCTATGGAATCGCAAAGATTTCTCAGCTGAACTTAACTTTTAGGGAGATCATTTACAACTATAGGAAGCAACCACAATGCAAACCACAAGTTTTTCGTGGTGTATTTATTGACTGGTCATCAACACATCGCAATGGGAGAACCGGTCAGGAGCATGTTGATATCATTACATTTTACAATGAAATATTTATCCCCTCTGTAAAAGCTCTGCTGGTTGAACTTGGTCCTGGGGGAACAACTACGAAAGCTGACCGAATACCTGAAGCCAACAATAACAGTGATGGTCATTTAGCTCAGTGTCCTGGATCTCCTAAAATTTCTCCTTTTCCTAGCCTCCCTGATATGTCTCCAAAGAAAGTATCTTCATCGCACAATGTTTATGTCTCGCCATTGCGTTCAGCCAAGATGGATGCATTAATATCACATAGATCAAAAAGCTACTATGCCTGTGTTGGGGAGAGCACTCATGCATATCAGAGCCCTTCAAAAGACCTGACTGCCATCAATAACCGTTTGAATGGAAGCACCCGAAAGGTTCGAGGACCCCTCAACTTTGATGATGTTGATGTTGGCTTGGTGAGTGACTCCATGGTTGCAAACAGTCTGTATCTTCAGAATGGAAGTTGCGCTTCGTCATCGGGAGCACCGGTGAAGTCTGAGCAGCCAGAGAGTTGA 3174 0.4256 MATSHSRESRNGENFGGKNNLTPCRVALPLALDACIGLTRVSMSPPAEEKMEDGKPFTTSADSSQVHGEHGDPADSRFTELCKNGLSLDDRSCRQAMKLFTETKHLLQTNMSSLGNGTRLADKHIDGEKKVIDSNGLTLCQILRKEKLNIVDFFKELPQFLVKGGPILSNIYGADWENRLEAKELHANFLHLSILSKYYKRVFEEFFLANDAIEKNSAVSVTGDCASQYHRFGWLVFLALRVHAFSRFKDLVTCTNGLVSILAILIIHIPARFRNFNIHDASRFVKKSSKGVDIIASLCNIYDTSEDDVRKTMEKANNLIADILKKKPCLASEFETATLENIDKDGLFYFNDLMEESSLPSCLNILEKDYDDAIRNKGELDERLFINEEDSLLASGSLSGGSMSTSGVKRKFDSMASPAKTITSPLSPQRSPASHHANGISISASSKMAATPVTTAMTTAKWLRNVICTLPSKPSPELEKFLASCDRDVTNDVVRRAQIILQAIFPTSPLGERCLTGTLQSANLMDNVWAEQRRLEAMKLYYRVLEAMCRAEAQILHATNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEDSLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARPSLSSEITRLGLLAEPMPSLDAIATQINFCCGGLPTGPSLQKPETLPSQNGDIRSPKRLCKEYQSVLAERNSFTSPVKDRLPSSNIKSKLPPPLQSAFASPTRPNPGGGGETCAETGINIFFGKIVKLAAVRISGMVERLQLSQQIRENVYCLFQKILNQRTSIFFNRHIDQIILCCFYGIAKISQLNLTFREIIYNYRKQPQCKPQVFRGVFIDWSSTHRNGRTGQEHVDIITFYNEIFIPSVKALLVELGPGGTTTKADRIPEANNNSDGHLAQCPGSPKISPFPSLPDMSPKKVSSSHNVYVSPLRSAKMDALISHRSKSYYACVGESTHAYQSPSKDLTAINNRLNGSTRKVRGPLNFDDVDVGLVSDSMVANSLYLQNGSCASSSGAPVKSEQPES 1057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g1146 1057 FunFam Retinoblastoma-related protein 1 726 937 - -
Lele32g1146 1057 SUPERFAMILY Cyclin-like 772 944 IPR036915 -
Lele32g1146 1057 SUPERFAMILY Cyclin-like 459 654 IPR036915 -
Lele32g1146 1057 MobiDBLite consensus disorder prediction 1 18 - -
Lele32g1146 1057 FunFam Retinoblastoma-related protein 1 229 387 - -
Lele32g1146 1057 FunFam Retinoblastoma-related protein 1 454 642 - -
Lele32g1146 1057 Gene3D - 454 642 - -
Lele32g1146 1057 Pfam Retinoblastoma-associated protein B domain 774 901 IPR002719 GO:0005634|GO:0051726
Lele32g1146 1057 Gene3D - 229 387 - -
Lele32g1146 1057 MobiDBLite consensus disorder prediction 1 20 - -
Lele32g1146 1057 MobiDBLite consensus disorder prediction 419 438 - -
Lele32g1146 1057 Pfam Retinoblastoma-associated protein A domain 451 652 IPR002720 GO:0005634|GO:0051726
Lele32g1146 1057 Gene3D - 723 925 - -
Lele32g1146 1057 MobiDBLite consensus disorder prediction 730 766 - -
Lele32g1146 1057 Coils Coil 363 383 - -
Lele32g1146 1057 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 74 1056 IPR028309 GO:0006357|GO:0051726
Lele32g1146 1057 SMART DUF3452_2 120 268 IPR024599 -
Lele32g1146 1057 MobiDBLite consensus disorder prediction 45 75 - -
Lele32g1146 1057 SMART RB_A_2 451 652 IPR002720 GO:0005634|GO:0051726
Lele32g1146 1057 Pfam Domain of unknown function (DUF3452) 130 268 IPR024599 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g1146 Lele-ChrLele32 11549467 11556511 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele32g1146 70 1057 Core Cell Cycle Gene Families AT3G12280 69.813 0.0 1367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Lele32g1146 RB_A 2.2e-64 CL0065