Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g1132 ATGACAAGGCATGTCAAAGAATTTCATAATGGGAATTCCACCCCTTCTAAAGTTGAAACTCAGAAGCAGTATGAATGCGCAGAAATTGGCTGTGGAAAGGTTTTCAAATATGCTTCAAAGCTACAGAAGCATGAAAATTGTCATGTTAAGCTGGACTCAATGGAGGTACTCTGCTTGGATCCTGGTTGCATGAAACATTTTACCAATGTCCAGTGCCTTAAAGCCCATGTCAAAACCTGTCATCAATTTGTCACCTGTGAGACTTGTGGGAAAAAGGAGCTGAAGAAGAATATCAAGCGGCACCTTCGGGTGCATGAAACTAGTTCTTCATCAGAGGCATTTAAATGTGAATACAAGGGTTGTAGCAGGACATTCACTAGGAAATCCAATCTTCATAAGCACGTAAAGGCAGCACACTTGAAAGAAAAACCATTTGTGTGTGGCTTTCCTGATTGTGGCATGAGATTTTCCTACAAACATGTGAGGGACAACCACGAAAAGACACACGTTTATACACATGGGGATTTTGAAGGATCTGATGAACAATTCAGGTCAAGGCCAAGGGGAGGGAGAAAGAGAAAGTGTCCTACAGTTGAAATGTTAGTTAGGAAAAGGGTCACCACTCCCAATCAATTGGAGCGCGTTTTGTTTGGAGAGGATACAGAGTAA 669 0.4185 MTRHVKEFHNGNSTPSKVETQKQYECAEIGCGKVFKYASKLQKHENCHVKLDSMEVLCLDPGCMKHFTNVQCLKAHVKTCHQFVTCETCGKKELKKNIKRHLRVHETSSSSEAFKCEYKGCSRTFTRKSNLHKHVKAAHLKEKPFVCGFPDCGMRFSYKHVRDNHEKTHVYTHGDFEGSDEQFRSRPRGGRKRKCPTVEMLVRKRVTTPNQLERVLFGEDTE 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g1132 222 SUPERFAMILY beta-beta-alpha zinc fingers 21 48 IPR036236 -
Lele32g1132 222 SUPERFAMILY beta-beta-alpha zinc fingers 139 170 IPR036236 -
Lele32g1132 222 Gene3D Classic Zinc Finger 142 169 - -
Lele32g1132 222 ProSitePatterns Zinc finger C2H2 type domain signature. 26 48 IPR013087 -
Lele32g1132 222 Gene3D Classic Zinc Finger 87 141 - -
Lele32g1132 222 Gene3D Classic Zinc Finger 1 83 - -
Lele32g1132 222 ProSiteProfiles Zinc finger C2H2 type domain profile. 114 144 IPR013087 -
Lele32g1132 222 SUPERFAMILY beta-beta-alpha zinc fingers 97 149 IPR036236 -
Lele32g1132 222 ProSitePatterns Zinc finger C2H2 type domain signature. 147 169 IPR013087 -
Lele32g1132 222 ProSiteProfiles Zinc finger C2H2 type domain profile. 24 53 IPR013087 -
Lele32g1132 222 ProSitePatterns Zinc finger C2H2 type domain signature. 58 81 IPR013087 -
Lele32g1132 222 Pfam Zinc finger, C2H2 type 24 45 IPR013087 -
Lele32g1132 222 Pfam Zinc finger, C2H2 type 114 139 IPR013087 -
Lele32g1132 222 PANTHER ZINC FINGER PROTEIN 1 212 - -
Lele32g1132 222 SMART c2h2final6 114 139 IPR013087 -
Lele32g1132 222 SMART c2h2final6 56 81 IPR013087 -
Lele32g1132 222 SMART c2h2final6 145 169 IPR013087 -
Lele32g1132 222 SMART c2h2final6 84 105 IPR013087 -
Lele32g1132 222 SMART c2h2final6 24 48 IPR013087 -
Lele32g1132 222 ProSiteProfiles Zinc finger C2H2 type domain profile. 145 169 IPR013087 -
Lele32g1132 222 ProSitePatterns Zinc finger C2H2 type domain signature. 116 139 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g1132 Lele-ChrLele32 11341970 11343110 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele32g1132 10 172 C2H2 Transcription Factor Family AT1G72050 62.048 5.82e-71 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele32g1132 zf-C2H2 0.00019 CL0361