Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g0994 ATGAATTTGAATAGAGAGAATGATGATAATTTGCAGATGGGGAGGGGGAAGATAGAAATAAAGAGGATAGAGAACACAACGAATCGACAGGTGACATTCTGCAAAAGAAGGAATGGGCTTTTGAAGAAAGCTTATGAGCTTTCTGTTCTCTGTGATGCTGAAGTTTCACTCATCGTCTTCTCCAATCGTGGCCGTCTCTATGAGTACTCGAACAACAACATAAGGTCAACTATTGAGAGGTATAAAAAGGCTTCAGACCATTCAAGTACCAGCTCTACCACTGAAATCAATGCACAGTATTATCAACAAGAATCTGCAAAGCTACGACAGCAGATTCAAATGCTGCAAAGTTCTAACAGGAACTTGATGGGTGATGCCTTGAGCACTCTGAATGTGAAGGAGCTGAAGCAACTTGAGAATAGACTTGAACGAGGACTCTCTAGGATCAGGTCCAAAAAGCACGAGATGCTGCTGACAGAAATCGAATACATGCAGAAGAAGGAGGTTGAACTTGAAAATGAAAACCTTTGTATTCGAACTAAGATAGCACAAGCAGAGAGGGCAGAAGAAGAGATGGTATCATCATCAGGAGGGCAAGAGCTGAGTGCCATTCATGCTTTGGCTTCTCGAAATTACTTCATCGATACTATTCCATTTCCCTACACTCCTCCTTCAACTGAGCACAAGAATCTTCGCCTTTGGTAA 705 0.4199 MNLNRENDDNLQMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSNRGRLYEYSNNNIRSTIERYKKASDHSSTSSTTEINAQYYQQESAKLRQQIQMLQSSNRNLMGDALSTLNVKELKQLENRLERGLSRIRSKKHEMLLTEIEYMQKKEVELENENLCIRTKIAQAERAEEEMVSSSGGQELSAIHALASRNYFIDTIPFPYTPPSTEHKNLRLW 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g0994 234 CDD MADS_MEF2_like 14 86 IPR033896 GO:0000977|GO:0045944
Lele32g0994 234 Coils Coil 132 155 - -
Lele32g0994 234 PANTHER SERUM RESPONSE FACTOR HOMOLOG 13 174 - -
Lele32g0994 234 Pfam K-box region 96 182 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele32g0994 234 SMART madsneu2 13 72 IPR002100 GO:0003677|GO:0046983
Lele32g0994 234 PRINTS MADS domain signature 50 71 IPR002100 GO:0003677|GO:0046983
Lele32g0994 234 PRINTS MADS domain signature 35 50 IPR002100 GO:0003677|GO:0046983
Lele32g0994 234 PRINTS MADS domain signature 15 35 IPR002100 GO:0003677|GO:0046983
Lele32g0994 234 ProSiteProfiles MADS-box domain profile. 13 73 IPR002100 GO:0003677|GO:0046983
Lele32g0994 234 SUPERFAMILY SRF-like 14 102 IPR036879 GO:0003677|GO:0046983
Lele32g0994 234 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 22 69 IPR002100 GO:0003677|GO:0046983
Lele32g0994 234 ProSiteProfiles K-box domain profile. 98 188 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele32g0994 234 ProSitePatterns MADS-box domain signature. 15 69 IPR002100 GO:0003677|GO:0046983
Lele32g0994 234 FunFam agamous-like MADS-box protein AGL11 25 107 - -
Lele32g0994 234 Gene3D - 25 115 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g0994 Lele-ChrLele32 6903973 6910905 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele32g0994 13 217 MADS-box Gene Family AT4G09960 74.757 7.25e-109 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele32g0994 K-box 3.7e-26 No_clan