Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g0967 ATGGAGGCTCAGAAGATTCTTCAACGAAAAGGAAAATCATCCTCTACAGTTGATGATGATATGGAGAAATCAACAGTGGCTGAAGCTAAACCGAGTCTTTTGGTTAAGGTGTCACAGTTGAAACGGGATCAACCTGAGATTAGTCCGACAGAGCAGCTTGTTCAACAAGAAAAAGAGATGATTGAGAACTTATCAGATCGAAAAACTCTGATGTCTGTTCGGGAATTGGCTAAGGGAATCACCTATACGGATCCTTTACCTACTGGATGGAAGCCACCTTTACCAATTAGAAGAATGTCAAAAAAAGCATGCGATTTGATTCGGAAGCAGTGGCATATAATAGTCGATGGTGAAGACATCCCACCCCCAATTAAGAACTTCAAGGACATGAGGTTTCCTGAGCCTATTTTGAAGAAATTGAAAGAAAAAGGGATTGTTCAACCAACACCTATCCAAGTACAAGGCCTTCCCGTGATCTTATCCGGGAGGGATATGATCGGGATCGCATTCACGGGATCAGGGAAAACTCTAGTCTTCGTGTTGCCAATGATCATGATGGCAGTGCAAGAGGAAATTATGATGCCTATTGTTCCAGGAGAAGGTCCATTTGGTTTGATTATTTGCCCATCAAGGGAACTAGCTAGACAGACTTATGAAGTAGTTGAACAGTTCCTGCTACCTCTGAGAGAAGCAGGGTATCCTGAACTCCGGCCATTGCTTTGTATTGGTGGGGTAGATATGAGGTTACAGCTAGATGTTGTGAAGAAGGGTGTTCACATTGTTATTGCCACCCCTGGTAGGTTAAAGGATATGTTGGCAAAGAAAAAAATGAATCTTGATAATTGCAGGTATTTAACATTAGATGAGGCTGATAGATTGGTAGATTTGGGATTTGAAGATGACATTAGAGAAGTGTTTGATCACTTCAAAGCTCAAAGGCAAACGCTTTTATTTTCTGCCACCATGCCAACAAAAATTCAGAATTTTGCTAGAAGTGCTCTAGTGAAACCAGTCATTGTCAACGTGGGGCGAGCAGGGGCGGCAAATCTTGACGTAATCCAGGAGGTAGAGTATGTTAAGCAAGAGGCAAAGATAGTTTATCTCCTTGAGTGCCTGCAAAAAACCCCACCTCCAGTTTTAATATTCTGTGAGAATAAGGCTGATGTTGATGACATTCATGAATATCTTCTCTTGAAAGGAGTGGAAGCAGTGGCTATTCATGGTGGCAAAGACCAGGAAGAGAGAGAGTATGCAATTGCAGCCTTTAAAGCTGGAAAGAAAGATGTGTTGGTTGCAACTGATGTTGCATCCAAGGGATTGGATTTTCCTGATATTCAGCATGTTATTAACTATGACATGCCTGCTGAAATTGAAAACTATGTTCATAGGATTGGACGAACCGGACGATGCGGCAAGACTGGCATAGCAACGACGTTCATTAACAAGAATCAAACTGAGACAACCTTGCTTGACTTGAAACATCTGTTGCAAGAAGCAAAACAGCGTATTCCCCCAGTTTTAGCAGAGCTGAATGATCCGATGGAATACAATGAGGAAATCACGGATAAAAGCGGGGTCAAGGGCTGTGCGTATTGTGGCGGGCTCGGTCATCGCATTCGGGACTGCCCCAAATTGGAACATCAGAAGAGCATGGCAATTGCAAATAACAGAAGGGATTATTTTGGTTCTGGTGGATACAGAGGAGAAATATGA 1713 0.4256 MEAQKILQRKGKSSSTVDDDMEKSTVAEAKPSLLVKVSQLKRDQPEISPTEQLVQQEKEMIENLSDRKTLMSVRELAKGITYTDPLPTGWKPPLPIRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKEKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIMMAVQEEIMMPIVPGEGPFGLIICPSRELARQTYEVVEQFLLPLREAGYPELRPLLCIGGVDMRLQLDVVKKGVHIVIATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVIVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAIAAFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQTETTLLDLKHLLQEAKQRIPPVLAELNDPMEYNEEITDKSGVKGCAYCGGLGHRIRDCPKLEHQKSMAIANNRRDYFGSGGYRGEI 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g0967 570 CDD SF2_C_DEAD 352 480 - -
Lele32g0967 570 SMART ultradead3 144 355 IPR014001 -
Lele32g0967 570 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 125 153 IPR014014 GO:0003724
Lele32g0967 570 SMART c2hcfinal6 528 544 IPR001878 GO:0003676|GO:0008270
Lele32g0967 570 FunFam Probable ATP-dependent RNA helicase DDX41 350 512 - -
Lele32g0967 570 SUPERFAMILY Retrovirus zinc finger-like domains 528 549 IPR036875 GO:0003676|GO:0008270
Lele32g0967 570 SMART helicmild6 390 471 IPR001650 -
Lele32g0967 570 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 156 340 IPR014001 -
Lele32g0967 570 MobiDBLite consensus disorder prediction 1 25 - -
Lele32g0967 570 FunFam Probable ATP-dependent RNA helicase DDX41 92 341 - -
Lele32g0967 570 ProSiteProfiles Zinc finger CCHC-type profile. 529 544 IPR001878 GO:0003676|GO:0008270
Lele32g0967 570 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 201 486 IPR027417 -
Lele32g0967 570 Pfam Helicase conserved C-terminal domain 364 471 IPR001650 -
Lele32g0967 570 CDD DEADc_DDX41 136 341 IPR044113 GO:0000398|GO:0003724|GO:0005524
Lele32g0967 570 Pfam Zinc knuckle 528 544 IPR001878 GO:0003676|GO:0008270
Lele32g0967 570 Gene3D - 350 512 IPR027417 -
Lele32g0967 570 Gene3D - 94 344 IPR027417 -
Lele32g0967 570 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 351 511 IPR001650 -
Lele32g0967 570 Pfam DEAD/DEAH box helicase 149 328 IPR011545 GO:0003676|GO:0005524
Lele32g0967 570 Coils Coil 482 502 - -
Lele32g0967 570 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 85 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g0967 Lele-ChrLele32 6657401 6659113 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele32g0967 113 510 Eukaryotic Initiation Factors Gene Family AT3G19760 31.172 2.47e-56 193