Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lele32g0967 | ATGGAGGCTCAGAAGATTCTTCAACGAAAAGGAAAATCATCCTCTACAGTTGATGATGATATGGAGAAATCAACAGTGGCTGAAGCTAAACCGAGTCTTTTGGTTAAGGTGTCACAGTTGAAACGGGATCAACCTGAGATTAGTCCGACAGAGCAGCTTGTTCAACAAGAAAAAGAGATGATTGAGAACTTATCAGATCGAAAAACTCTGATGTCTGTTCGGGAATTGGCTAAGGGAATCACCTATACGGATCCTTTACCTACTGGATGGAAGCCACCTTTACCAATTAGAAGAATGTCAAAAAAAGCATGCGATTTGATTCGGAAGCAGTGGCATATAATAGTCGATGGTGAAGACATCCCACCCCCAATTAAGAACTTCAAGGACATGAGGTTTCCTGAGCCTATTTTGAAGAAATTGAAAGAAAAAGGGATTGTTCAACCAACACCTATCCAAGTACAAGGCCTTCCCGTGATCTTATCCGGGAGGGATATGATCGGGATCGCATTCACGGGATCAGGGAAAACTCTAGTCTTCGTGTTGCCAATGATCATGATGGCAGTGCAAGAGGAAATTATGATGCCTATTGTTCCAGGAGAAGGTCCATTTGGTTTGATTATTTGCCCATCAAGGGAACTAGCTAGACAGACTTATGAAGTAGTTGAACAGTTCCTGCTACCTCTGAGAGAAGCAGGGTATCCTGAACTCCGGCCATTGCTTTGTATTGGTGGGGTAGATATGAGGTTACAGCTAGATGTTGTGAAGAAGGGTGTTCACATTGTTATTGCCACCCCTGGTAGGTTAAAGGATATGTTGGCAAAGAAAAAAATGAATCTTGATAATTGCAGGTATTTAACATTAGATGAGGCTGATAGATTGGTAGATTTGGGATTTGAAGATGACATTAGAGAAGTGTTTGATCACTTCAAAGCTCAAAGGCAAACGCTTTTATTTTCTGCCACCATGCCAACAAAAATTCAGAATTTTGCTAGAAGTGCTCTAGTGAAACCAGTCATTGTCAACGTGGGGCGAGCAGGGGCGGCAAATCTTGACGTAATCCAGGAGGTAGAGTATGTTAAGCAAGAGGCAAAGATAGTTTATCTCCTTGAGTGCCTGCAAAAAACCCCACCTCCAGTTTTAATATTCTGTGAGAATAAGGCTGATGTTGATGACATTCATGAATATCTTCTCTTGAAAGGAGTGGAAGCAGTGGCTATTCATGGTGGCAAAGACCAGGAAGAGAGAGAGTATGCAATTGCAGCCTTTAAAGCTGGAAAGAAAGATGTGTTGGTTGCAACTGATGTTGCATCCAAGGGATTGGATTTTCCTGATATTCAGCATGTTATTAACTATGACATGCCTGCTGAAATTGAAAACTATGTTCATAGGATTGGACGAACCGGACGATGCGGCAAGACTGGCATAGCAACGACGTTCATTAACAAGAATCAAACTGAGACAACCTTGCTTGACTTGAAACATCTGTTGCAAGAAGCAAAACAGCGTATTCCCCCAGTTTTAGCAGAGCTGAATGATCCGATGGAATACAATGAGGAAATCACGGATAAAAGCGGGGTCAAGGGCTGTGCGTATTGTGGCGGGCTCGGTCATCGCATTCGGGACTGCCCCAAATTGGAACATCAGAAGAGCATGGCAATTGCAAATAACAGAAGGGATTATTTTGGTTCTGGTGGATACAGAGGAGAAATATGA | 1713 | 0.4256 | MEAQKILQRKGKSSSTVDDDMEKSTVAEAKPSLLVKVSQLKRDQPEISPTEQLVQQEKEMIENLSDRKTLMSVRELAKGITYTDPLPTGWKPPLPIRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKEKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIMMAVQEEIMMPIVPGEGPFGLIICPSRELARQTYEVVEQFLLPLREAGYPELRPLLCIGGVDMRLQLDVVKKGVHIVIATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVIVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAIAAFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQTETTLLDLKHLLQEAKQRIPPVLAELNDPMEYNEEITDKSGVKGCAYCGGLGHRIRDCPKLEHQKSMAIANNRRDYFGSGGYRGEI | 570 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lele32g0967 | 570 | CDD | SF2_C_DEAD | 352 | 480 | - | - | |
Lele32g0967 | 570 | SMART | ultradead3 | 144 | 355 | IPR014001 | - | |
Lele32g0967 | 570 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 125 | 153 | IPR014014 | GO:0003724 | |
Lele32g0967 | 570 | SMART | c2hcfinal6 | 528 | 544 | IPR001878 | GO:0003676|GO:0008270 | |
Lele32g0967 | 570 | FunFam | Probable ATP-dependent RNA helicase DDX41 | 350 | 512 | - | - | |
Lele32g0967 | 570 | SUPERFAMILY | Retrovirus zinc finger-like domains | 528 | 549 | IPR036875 | GO:0003676|GO:0008270 | |
Lele32g0967 | 570 | SMART | helicmild6 | 390 | 471 | IPR001650 | - | |
Lele32g0967 | 570 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 156 | 340 | IPR014001 | - | |
Lele32g0967 | 570 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Lele32g0967 | 570 | FunFam | Probable ATP-dependent RNA helicase DDX41 | 92 | 341 | - | - | |
Lele32g0967 | 570 | ProSiteProfiles | Zinc finger CCHC-type profile. | 529 | 544 | IPR001878 | GO:0003676|GO:0008270 | |
Lele32g0967 | 570 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 201 | 486 | IPR027417 | - | |
Lele32g0967 | 570 | Pfam | Helicase conserved C-terminal domain | 364 | 471 | IPR001650 | - | |
Lele32g0967 | 570 | CDD | DEADc_DDX41 | 136 | 341 | IPR044113 | GO:0000398|GO:0003724|GO:0005524 | |
Lele32g0967 | 570 | Pfam | Zinc knuckle | 528 | 544 | IPR001878 | GO:0003676|GO:0008270 | |
Lele32g0967 | 570 | Gene3D | - | 350 | 512 | IPR027417 | - | |
Lele32g0967 | 570 | Gene3D | - | 94 | 344 | IPR027417 | - | |
Lele32g0967 | 570 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 351 | 511 | IPR001650 | - | |
Lele32g0967 | 570 | Pfam | DEAD/DEAH box helicase | 149 | 328 | IPR011545 | GO:0003676|GO:0005524 | |
Lele32g0967 | 570 | Coils | Coil | 482 | 502 | - | - | |
Lele32g0967 | 570 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 85 | 511 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lele32g0967 | Lele-ChrLele32 | 6657401 | 6659113 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lele32g0967 | 113 | 510 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 31.172 | 2.47e-56 | 193 |