Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele32g0927 ATGGGTCTCGTCATTATGTGTCTTTTATGGCAATTAGCAAAGAAGGTGTTCCTTGGCACACTCCGAGAGGCAGAGGTTGAGAGGCTTAATGAGCAATCATGGAGGGAGGTTATGGAAATTCTCTTTGCCATCACCATTTTTCGGCAGGATTTCTCTGTTACATTCCTTGCTATGGTCACAACACTGTTGTTGATCAAAGCTTTACATTGGTTGGCTCAGAAAAGAGTTGAATATATTGAGACAACTCCTACAGTGCCCTTGTTGTCTCACATTCGAATAGTGTCTTTTATGGGTTTCCTCCTCCTTCTGGATGGACTCTTTCTATATAGTTCCGTGAAGCATTTGATACAATCATGGCAGGCTTCAGTTTCCCTCTTTTTTGCTTTCGAGTACATGATACTGGCAACAACAACAGTGTCAATTTTTGTAAAATATCTTTTCTATGTTAGTGACATGCTTATGGAAGGACAATGGGAAAAGAAACCAGTCTTCACATTCTACTTGGAACTCATTAGGGATCTGCTTCACTTGTCTATGTATATGTGTTTCTTCCTTGTAATTTTCATAAATTATGGTGTGCCTTTGCACTTAATACGGGAGCTGTATGAGACATTTAGGAACTTCAAAGTTCGTGTTGCTGACTACATACGTTATCGTAAGATTACTTCAAATATGAATGATCGGTTTCCAGATGCAACCCCTGAAGAGCTTAATGCAAGCGATGCTACATGTATTATCTGTCGTGAAGAGATGACTATAGCCAAGAAACTTATATGCGGACATCTTTTTCATGTGCATTGTCTCCGATCATGGTTGGAGCGACAACATACTTGCCCTACCTGCAGAGCGTTGGTTGTACCACCTGAAAATGGGGCAACTACTGCTGGAGGTCAGCATGGACCACAGTCAGATCCACAGGGAACAGGAGCAGGAACAAGTACCGGAAGCTCAGCTCAAGCTGAAATTGGCAGTGGGGCGGCTACTGATAATTGGAGTCATCATCAAGCTAGACTCCGAGCTGCAGCTGCCGCTGCTTCAATGTATGAGAAGTCTTTTGTGTATCCTTCCACAACTTCTTTAGCAGGCGCCCCTGGATACACTGTTTATCCTCCTGTTCAAAGACCCGCTGCTGAATCTACTAGTACTGAACTTAATATACAACATACTTCAAGTGAACAAACACGACGACAGTTTGTCATCCCTGGTGGACCAATGAATGTGTCCTTTCATCCGATGGCGTTTCCTTTTCCTCCTTCTCTAACACATGTAGCAAATGGGAATTATGCAGAGGGATCTGGATCTGATCCAAATATGCCTAACTCTCTGCTCGAAGCTCAAAGAATTCAACACCAGATTGAGATTCTGCAAAATCAGCTCCAGGTTCTGCTGAAGATGAGTGTTGAGGAAAAAGCAAATGAGGGCAAGTCCTCATCATCAAGTAGCAAAGACAAGCAGGTTGCTTCCTCCTCTTCATCGTAA 1479 0.4293 MGLVIMCLLWQLAKKVFLGTLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTTLLLIKALHWLAQKRVEYIETTPTVPLLSHIRIVSFMGFLLLLDGLFLYSSVKHLIQSWQASVSLFFAFEYMILATTTVSIFVKYLFYVSDMLMEGQWEKKPVFTFYLELIRDLLHLSMYMCFFLVIFINYGVPLHLIRELYETFRNFKVRVADYIRYRKITSNMNDRFPDATPEELNASDATCIICREEMTIAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGATTAGGQHGPQSDPQGTGAGTSTGSSAQAEIGSGAATDNWSHHQARLRAAAAAASMYEKSFVYPSTTSLAGAPGYTVYPPVQRPAAESTSTELNIQHTSSEQTRRQFVIPGGPMNVSFHPMAFPFPPSLTHVANGNYAEGSGSDPNMPNSLLEAQRIQHQIEILQNQLQVLLKMSVEEKANEGKSSSSSSKDKQVASSSSS 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele32g0927 492 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 216 289 IPR013083 -
Lele32g0927 492 SUPERFAMILY RING/U-box 224 288 - -
Lele32g0927 492 PANTHER RING ZINC FINGER PROTEIN 2 456 - -
Lele32g0927 492 MobiDBLite consensus disorder prediction 478 492 - -
Lele32g0927 492 Coils Coil 445 465 - -
Lele32g0927 492 MobiDBLite consensus disorder prediction 469 492 - -
Lele32g0927 492 FunFam ERAD-associated E3 ubiquitin-protein ligase HRD1A 216 291 - -
Lele32g0927 492 Pfam Ring finger domain 243 282 IPR001841 -
Lele32g0927 492 MobiDBLite consensus disorder prediction 295 320 - -
Lele32g0927 492 MobiDBLite consensus disorder prediction 292 320 - -
Lele32g0927 492 SMART ring_2 244 281 IPR001841 -
Lele32g0927 492 CDD RING-H2_synoviolin 241 282 - -
Lele32g0927 492 ProSiteProfiles Zinc finger RING-type profile. 244 282 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele32g0927 Lele-ChrLele32 6275739 6281577 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele32g0927 1 482 C3H Transcription Factor Family AT3G16090 63.190 0.0 586